Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3700g00034 ATGGCACCCAAGAACAATGGACCAACTAAGAAAGCAGTGAACAGAGGAGCATGGACTCCAGAAGAAGATAAAAAACTAGCCCAATGCATTGAAATTCATGGAGCAAAGAGGTGGAAGACTGTTGCAGTCAAATCAGGTCTAAATAGATGTGGAAAGAGTTGCAGACTGAGATGGTTAAATTATTTGAGACCCAATATCAAGAGGGGTAACATATCAGATGAAGAAGAGGATTTGATCCTTAGGCTTCACAAACTTCTGGGAAACAGGTGGTCTTTGATAGCAGGGAGGCTTCCAGGACGAACAGACAATGAGATTAAGAATTATTGGAATTCTCATTTGTGCAAAAAAGTCAATCACAAAGAGAAAAAATTAGAAATTTCTACCACTCTAGAAACTACAGAACAGAACCAGAACACTAGGGACAGTGCCGTGTTAGAGCATGAGGAAGCGATTAATGGGAGTGGTAACTCAGATGTTAACTTTGACGTGAACGAGTTCTTCAACTTCCCTGCTGAAGGATATGATTGGGTGAACATGTACTTAGAACTTGATCAGATTCCTCAGAGCACATAA 573 0.4049 MAPKNNGPTKKAVNRGAWTPEEDKKLAQCIEIHGAKRWKTVAVKSGLNRCGKSCRLRWLNYLRPNIKRGNISDEEEDLILRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNSHLCKKVNHKEKKLEISTTLETTEQNQNTRDSAVLEHEEAINGSGNSDVNFDVNEFFNFPAEGYDWVNMYLELDQIPQST 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3700g00034 190 FunFam Transcription factor TT2 71 142 - -
Gabi3700g00034 190 FunFam MYB-related transcription factor 14 67 - -
Gabi3700g00034 190 Gene3D - 72 144 - -
Gabi3700g00034 190 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Gabi3700g00034 190 SUPERFAMILY Homeodomain-like 13 109 IPR009057 -
Gabi3700g00034 190 CDD SANT 72 113 IPR001005 -
Gabi3700g00034 190 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Gabi3700g00034 190 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
Gabi3700g00034 190 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Gabi3700g00034 190 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 9 142 - -
Gabi3700g00034 190 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 62 IPR017930 -
Gabi3700g00034 190 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Gabi3700g00034 190 SMART sant 67 115 IPR001005 -
Gabi3700g00034 190 SMART sant 14 64 IPR001005 -
Gabi3700g00034 190 CDD SANT 17 62 IPR001005 -
Gabi3700g00034 190 Gene3D - 8 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3700g00034 Gabi-Chr3700 173543 174642 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3700g00034 15 163 MYB Transcription Factor Family AT5G40330 50.336 1.25e-51 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gabi3700g00034 Myb_DNA-binding 6.7e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3700g00034 K09422 - gmx:100799575 292.352