Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3699g00008 ATGGCTGATCCAAGGTTCAATGTTCCTTTTCATGAGTCATCATTTGACGCTCCACCTTCCCCAAACTTTTTTGATTTCGATTTATCCAATACTTCACTGCCCCAATTACAAACTCATGATCAACATGATGAAGTTCAACAGGGTGGTGGTAATAATGATCATAACTATTCTGAATCGGATCCAATGATTCAAGATCACATTGTGCACGATAGTAGTTTCCCCTATGGTGGAGGACGGAACTTTGAAGCGGGTGGTTCATCATCACAAATGCATGGGGATGGGTTTCAAAGTCAGCATCATGCAAATGAGAATTTAGGAGGGGGGTCACAGAGTCAAAACAATCAAGTGCTCGCACTTGATTATTGGCCCGTGCCACCAGCCCCATTTTTTTGCAGTTGCTGTCAAGTTCTTAGAGAAATTGTTCACACTAATGGTATTAAGTTCGAAAAGCTTGAGATTCACGGAAGGCTCGGGGTGATTAGCCATGCAATTCACCATAAGAATATCAGCAGGGGTTCTACAAGCAACCCTCAATATGAAATGATTGAGTATGTTCTAGTTCTTGCTACTACTTTTGTTTTTTGTGGTAATTTCGTTGAAGAGAGTTTTTGCCAGAGAAACATTGAAGAAGTGAAGCAATTCCTAATCCAGTATTGTCAGGGGCAAAGTTCAGCAGGCTACTTTATTATGCAAGATCCGATGTCTATCTATTATGATGCCCTCTGCACTGGATTGGATTGGACTGAAGATATAAATGATGACTTTGTTGATTTGAATCCATCAGCACCAAATGCTGATGACACGGAACAAGAAGCTGACAATGAAAGGGCTCCTAAATTACCCATATCAGCACAGAGGGAGAGAGCGGCTAAGATGCAATTGAGTGATGTAAGCGATTACTTTCATCTACCTATTGATGAAGCAGCTAGGCAATTGAACTTATCTACCACTGTTGTGAAGAAAATTTGCCGTAAGGCAGGATTAGCACGATGGCCTCACAGAAAGATCAAAAGCGTTTGGAAGCAAATCACAATACTCACAAGAACATTATTAGAATCAGAAGATGAAGAGTCAAGGGAAAACACTCAAGCTGAAATTAACAGACTTGAACATGATATGATCCAGCATTGTGGTGGAATTGCACCAACTGCATTAAATTTGGAAAACTTGGACATATAG 1179 0.4054 MADPRFNVPFHESSFDAPPSPNFFDFDLSNTSLPQLQTHDQHDEVQQGGGNNDHNYSESDPMIQDHIVHDSSFPYGGGRNFEAGGSSSQMHGDGFQSQHHANENLGGGSQSQNNQVLALDYWPVPPAPFFCSCCQVLREIVHTNGIKFEKLEIHGRLGVISHAIHHKNISRGSTSNPQYEMIEYVLVLATTFVFCGNFVEESFCQRNIEEVKQFLIQYCQGQSSAGYFIMQDPMSIYYDALCTGLDWTEDINDDFVDLNPSAPNADDTEQEADNERAPKLPISAQRERAAKMQLSDVSDYFHLPIDEAARQLNLSTTVVKKICRKAGLARWPHRKIKSVWKQITILTRTLLESEDEESRENTQAEINRLEHDMIQHCGGIAPTALNLENLDI 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3699g00008 392 MobiDBLite consensus disorder prediction 258 279 - -
Gabi3699g00008 392 ProSiteProfiles RWP-RK domain profile. 279 359 IPR003035 -
Gabi3699g00008 392 MobiDBLite consensus disorder prediction 24 58 - -
Gabi3699g00008 392 MobiDBLite consensus disorder prediction 82 110 - -
Gabi3699g00008 392 PANTHER PROTEIN RKD4 65 371 IPR044607 GO:0003700
Gabi3699g00008 392 MobiDBLite consensus disorder prediction 1 60 - -
Gabi3699g00008 392 Coils Coil 352 372 - -
Gabi3699g00008 392 Pfam RWP-RK domain 292 339 IPR003035 -
Gabi3699g00008 392 MobiDBLite consensus disorder prediction 74 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3699g00008 Gabi-Chr3699 51522 53584 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3699g00008 297 372 AtRKD Transcription Factor Family AT1G18790 40.789 3.87e-13 67.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Gabi3699g00008 RWP-RK 1.9e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3699g00008 - - aprc:113850591 338.576