Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3699g00007 ATGGCAATTGCACGCACCGGAGTCTACGTCGACGACTATTTGGAGTACGCCAGCACATTGCCCGCTGAGCTTCAGAGGCTGCTTAACACCGTCCGAGAACTCGATGAACGATCCCAATCTATGATAAACCAGACCAGGCAGCAGACAAAGTACTGTATGGGGTTCTCATCACATGGCTCTAAGAAGGGTAATCATAGCTATAATCACAATTACGCCAATGAGGATGATGATGCTGCCATTGAGAAAATGCTAAAAGAAATCGAGGCAAATCAGGATAATGCATTGAGTCTATGTACTGAGAAGGTTTTGTTGGCACGGCAAGCATATGACCTGATAGATAGCCATGTAAAACGACTTGATGAGGATTTAAACAACTTTGCCGAAGATTTAAAGCAAGAGGGAAAAATACCACAAGATGAACCAGCAATTCTTCCCCCATTGCCTATAGTTCCTAAAACCGAAAAGCGCAGGCCCGTATATGGAACACCTCAATCGAAGAGACCTGATTACAGGGATAGAGACTGGGATCGGGAGCGTGATAGGGACTTTGAGCTAATGCCTCCACCAGGAAGCCATAAAAAGGAGTATGTAACCCCTATGGATGTTGATCAACCCATTGATCCAAATGAACCTACATACTGCGTTTGTCATCAGGTATCTTTTGGAGATATGATTGCTTGTGACAATGAAAATTGTCAAGGAGGTGAATGGTTCCATTATTCGTGTGTTGGCCTAACACAAGAGACAAGGTTCAAGGGAAAGTGGTATTGTCCGACATGCAGATTACTACCACAATGTCAATGA 804 0.4403 MAIARTGVYVDDYLEYASTLPAELQRLLNTVRELDERSQSMINQTRQQTKYCMGFSSHGSKKGNHSYNHNYANEDDDAAIEKMLKEIEANQDNALSLCTEKVLLARQAYDLIDSHVKRLDEDLNNFAEDLKQEGKIPQDEPAILPPLPIVPKTEKRRPVYGTPQSKRPDYRDRDWDRERDRDFELMPPPGSHKKEYVTPMDVDQPIDPNEPTYCVCHQVSFGDMIACDNENCQGGEWFHYSCVGLTQETRFKGKWYCPTCRLLPQCQ 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3699g00007 267 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 201 262 IPR013083 -
Gabi3699g00007 267 SMART PHD_3 213 261 IPR001965 -
Gabi3699g00007 267 MobiDBLite consensus disorder prediction 138 197 - -
Gabi3699g00007 267 SUPERFAMILY FYVE/PHD zinc finger 188 262 IPR011011 -
Gabi3699g00007 267 Gene3D - 5 124 - -
Gabi3699g00007 267 MobiDBLite consensus disorder prediction 159 189 - -
Gabi3699g00007 267 Coils Coil 24 44 - -
Gabi3699g00007 267 Pfam Inhibitor of growth proteins N-terminal histone-binding 9 126 IPR024610 -
Gabi3699g00007 267 FunFam PHD finger protein ING 205 263 - -
Gabi3699g00007 267 PANTHER INHIBITOR OF GROWTH PROTEIN 2 261 IPR028651 -
Gabi3699g00007 267 SMART ING_2 9 126 IPR024610 -
Gabi3699g00007 267 ProSiteProfiles Zinc finger PHD-type profile. 211 263 IPR019787 -
Gabi3699g00007 267 CDD ING_plant 17 123 - -
Gabi3699g00007 267 CDD PHD_ING 213 260 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3699g00007 Gabi-Chr3699 30919 34469 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Gabi3699g00007 ING 7e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3699g00007 - - gmx:100787916 511.916