Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3698g00062 ATGGACTGGACTAGGGGCCACACCCTCGGCCGGGGCTCCACCGCCGCAGTCTATATTGCCGAGGCTTGCCGGTCCGGTGAGGTGTTCGCCGTGAAATCGGCGGAGCTCCACCGTTCGGAAATGCTCAAGAGGGAGCAGAGGATTCTTTCCACACTGAGGTCTCCTCAAATTGTGGCATACCAAGGTTGTGATGTTACATTCGAGAATGGTGATCACTGGTACAACTTGTTCATGGAGTATGCACCTCACGGGACACTCGCTGAGGCAGTTCACGGTGGTGGGATGGAAGAAGATGTGGCGGGGTCCTACACGCGCCAAATTCTTCTTGGACTGAACTACCTCCATTCAAACGGGATAGTGCATTGCGACGTGAAGGGACAGAACGTGTTGGTCACGGACCAAGGTGCAAAAATTGCTGACTTGGGTTGCGCTAGGAGGGTCGATGATGAGTCGTCGTCGGTGATCGCGGGCACGCCGGTGTTCATGGCACCTGAGGTGGCGCGTGGGGAGCAGCAGGGTTTTCCTGCTGACGTGTGGGCTCTTGGATGTACTGTTCTGGAGATGATCACCGGGAAGCCACCGTGGCAGGGCGTTTCTGACCCGGCGGCGGTGCTTTATAGGATCGGGTTCTCCGGCGAGGTTCCGGAGATTCCGAGTTTTGTGTCGGAGCAAGGGAAGGACTTTTTGAGCAAGTGTTTGAAGAGGGACCCCAATGAGAGGTGGTCGGTGGTTGAGCTTCTCGGACATGGATTTGTTGAGGAATGCAAGGAATTATCTTTGTCGGATTCGGACACTCCCACGAGTGTGTTGGAACGAGGTTTTTGGGACTCGTTGGAGAGAACTCAACATCCCACACGTGATGAATGTTCCTGGGATTCTCCGAGTCCTAGTGACAGAATTCTTAGGTTGTTTGGTGCTGAGCCAATTTGGGAATGGGATGATGATGATGATGACCAATGGGTCACAGTGAGAAGCAATGAGTTGGAAGGTTTGTCCATTGAACAAACACAAGATCCTGGATCAGACACTATTTGCATCCTTAGAGACCAGGAGAATGGATTGGTAACTTTTTATGAATCAAAATTTGTAGTCACCACTATATTAGTTGAATTGAGTAGATGGAATGCCATTATTGATGATTGTTACCTTGGCGGTAGCAACTATGGCTGTAACTGTAGAAAATCATTATTAGTCTGGCCTTGTCCAAAGATTGTTCCCCATTGGAAATTTGATTCTTATAACACAAGAATTTTTTATCATGCATCGCTTTCTGCTCTTTCTTTCCCTCTTTAA 1293 0.4981 MDWTRGHTLGRGSTAAVYIAEACRSGEVFAVKSAELHRSEMLKREQRILSTLRSPQIVAYQGCDVTFENGDHWYNLFMEYAPHGTLAEAVHGGGMEEDVAGSYTRQILLGLNYLHSNGIVHCDVKGQNVLVTDQGAKIADLGCARRVDDESSSVIAGTPVFMAPEVARGEQQGFPADVWALGCTVLEMITGKPPWQGVSDPAAVLYRIGFSGEVPEIPSFVSEQGKDFLSKCLKRDPNERWSVVELLGHGFVEECKELSLSDSDTPTSVLERGFWDSLERTQHPTRDECSWDSPSPSDRILRLFGAEPIWEWDDDDDDQWVTVRSNELEGLSIEQTQDPGSDTICILRDQENGLVTFYESKFVVTTILVELSRWNAIIDDCYLGGSNYGCNCRKSLLVWPCPKIVPHWKFDSYNTRIFYHASLSALSFPL 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3698g00062 430 CDD STKc_MAPKKK 2 252 - -
Gabi3698g00062 430 ProSiteProfiles Protein kinase domain profile. 3 252 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3698g00062 430 SMART serkin_6 3 252 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3698g00062 430 SUPERFAMILY Protein kinase-like (PK-like) 2 274 IPR011009 -
Gabi3698g00062 430 Gene3D Transferase(Phosphotransferase) domain 1 2 289 - -
Gabi3698g00062 430 ProSitePatterns Serine/Threonine protein kinases active-site signature. 119 131 IPR008271 GO:0004672|GO:0006468
Gabi3698g00062 430 ProSitePatterns Protein kinases ATP-binding region signature. 9 32 IPR017441 GO:0005524
Gabi3698g00062 430 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 3 328 - -
Gabi3698g00062 430 Pfam Protein kinase domain 4 251 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3698g00062 430 FunFam Mitogen-activated protein kinase kinase kinase 17 2 299 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3698g00062 Gabi-Chr3698 579475 580767 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3698g00062 1 326 MAP Kinase Kinase Kinase AT1G05100 50.291 3.35e-106 316
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Gabi3698g00062 Pkinase 2.1e-55 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3698g00062 K20716 - gmx:100802174 544.658