Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3698g00017 ATGGAGTGGAATGCAAAGTCTTCCTCCCAGTGGGACTGGGAGCACCTATTCTTCTTAAACTCAAGAGCAACAGAAAATCCCAAATTACAACCACCAAACTGGAGTGGTGAAGCAAACCAAGAAATCAAAATGGGGTTGTTCGATACATCTGGTGGCAGTGGTTGTTCTGAGTCTGAGCTAGTACACGCTTCTTCATCAAGGAGCTCGAAATCAGCTTCCATCAATTCGTCATCAAATAGGGATAGTAAAACATCTATGTTCACTTTTGAAAGTTCCCAAGATGATTCCAGTGGCAAAAAAGAATTATCTAAAGAAGAACCAGTTGAAGCTTCTCATGCTCTAGAACCCTTTTCTGTCACTGGTGAACCATTGCTCACTCTAAAGCTAGGTAAACGGTTTTACTTTGAGGATATTTGCCCCGGAAGTGGTTCCAAGAACCTATCTTTCTCTGGGGCTCCCATGTCATCTTTAAGTTCAGGAAAGAAATGTAAGTCCAAAGGTCAGAACTTACCATATCCATGCTGCCAGGTTGAAGGCTGCGGCCTTGACCTTTCATCAGCTAAAGATTACCATCGCAGACATAGAGTTTGTGAAAGTCATTCCAAATCCCCTAAGGTGGTTATAGCTGGTTTGGAACTTCGATTTTGCCAGCAATGTAGCAGGTTCCATGGTCTGTCAGAGTTTGATGAAAAAAAGAGAAGCTGCAGACGACGTCTTTCAGATCACAATGCAAGGCGCCGTAAACCTCACCCTGAAGCCATCCAATTAAGTCAATCAGCTTTGTCTTCCTCACCCTCTGATGGGAGGCAACAAATGAGTCCATTCGCTTATCCAAGGACTGCTACTAATTTAACCTGGCAAGACATACACAGCAACAACCTCCCCCAGACAAAAGATTTTCTCAGGAATCCTGCAAAAGCCAATAATGAGATACCAAATATTGTCACTATGTTTTCTGATGACTCCAATGCCCATTTTACATCCAAAGGCCTTGCAACCAAGATTGTTAATCCAGCAGGTGTGGAAGATTCCATTACCTTCACTGATCCAAATGCTACACAAGATTTTCACCGTGCTCTCTCTCTTCTGTCAACCAATTCATGGGGTTCATATGAGACTAAGTCCATTTCAATAGAACACTCCAATCACACAACTAGTACCGCTCAGACCATAACACATGCAATGAGTCAGCGTTTACCTCTTGCTTCATCCGACTGTTGGCATGCAGATCCACAAGACAATTCCAGCATGTGGATCTCGTACTCAAACTGTGATGACAACAATCGCTTTCACGAATTTCAACTGTTCAGAGAACCTTATGAATCTGGTTTTCCTTACGACCAGTTGGATTAA 1353 0.4294 MEWNAKSSSQWDWEHLFFLNSRATENPKLQPPNWSGEANQEIKMGLFDTSGGSGCSESELVHASSSRSSKSASINSSSNRDSKTSMFTFESSQDDSSGKKELSKEEPVEASHALEPFSVTGEPLLTLKLGKRFYFEDICPGSGSKNLSFSGAPMSSLSSGKKCKSKGQNLPYPCCQVEGCGLDLSSAKDYHRRHRVCESHSKSPKVVIAGLELRFCQQCSRFHGLSEFDEKKRSCRRRLSDHNARRRKPHPEAIQLSQSALSSSPSDGRQQMSPFAYPRTATNLTWQDIHSNNLPQTKDFLRNPAKANNEIPNIVTMFSDDSNAHFTSKGLATKIVNPAGVEDSITFTDPNATQDFHRALSLLSTNSWGSYETKSISIEHSNHTTSTAQTITHAMSQRLPLASSDCWHADPQDNSSMWISYSNCDDNNRFHEFQLFREPYESGFPYDQLD 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3698g00017 450 MobiDBLite consensus disorder prediction 51 93 - -
Gabi3698g00017 450 Gene3D - 166 236 IPR036893 GO:0003677|GO:0005634
Gabi3698g00017 450 MobiDBLite consensus disorder prediction 233 273 - -
Gabi3698g00017 450 MobiDBLite consensus disorder prediction 255 273 - -
Gabi3698g00017 450 MobiDBLite consensus disorder prediction 24 115 - -
Gabi3698g00017 450 Pfam SBP domain 175 248 IPR004333 GO:0003677
Gabi3698g00017 450 SUPERFAMILY SBT domain 173 254 IPR036893 GO:0003677|GO:0005634
Gabi3698g00017 450 ProSiteProfiles Zinc finger SBP-type profile. 172 249 IPR004333 GO:0003677
Gabi3698g00017 450 MobiDBLite consensus disorder prediction 94 111 - -
Gabi3698g00017 450 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 59 395 IPR044817 GO:0003677
Gabi3698g00017 450 FunFam Squamosa promoter-binding-like protein 14 166 236 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3698g00017 Gabi-Chr3698 139536 143775 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3698g00017 1 411 SBP-box Gene Family AT5G43270 38.462 3.21e-61 203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Gabi3698g00017 SBP 1.3e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3698g00017 - - gmx:100781289 548.51