Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3698g00008 ATGAGTTTGCTCCATGTTGTTGGGTTTGGTCTAAAAGTGGGGCATCTACTTTTGGTGCTATGTTGCTGGTTTGGATCTGTCGTTTACCTTAACCGTTTCAGTAGCAGTGGAATTATGGACACCAAGATGGGTTTTCTGGGTGATGTTGGCAAGATATGGCTCAAATGTTGGGAGAAGATATCAGGGAATGGTTGCAAAATGTATATTGGGTCCAAGATAGTGAAGAGAGCGTTGTGGAGAAAGCTTTTGCTGACATGGGTATTGGGTTGGACTATAGCATCTTTGTGGATCTTCTGCTGTATAAGCTTACAAGCTACAGAGAAGAGGAAAGAAACTCTGGCAAGCATGTGTGATGAAAGGGCTAGGATGTTGCAGGATCAGTTTAATGTGAGTATGAACCATATCCAAGCCATGTCTATTCTGATCTCAACCTTCCACCATGCCAAGAGCCCCTCTGCCATCGATCAGGGAACTTTTGCCAGGTACACAGAAAGAACAGCTTTTGAGAGGCCTCTTACAAGTGGTGTTGCATATGCTGTAAGGGTGCTCCATTCTGAAAGGGAACAATTTGAGAAACAACAAGGCTGGACTATTAAGAGGATGGATACTCTGGAGCAGAACCCGGTGCATAAGGATGATTACGCCCCAGAGGCATTGGAGCCATCCCCCATTCAGGAAGAATATGCCCCTGTCATCTTTGCACAGGATACAATTTCCCATGTGATTTCTGTTGACATGCTTTCTGGAAAGGAAGACCGTGAAAATGTGTTGCGTGCAAGAGAGTCAGGCAAAGGGGTTTTAACTGCGCCCTTCAGGCTGCTCAAATCGAATCGTCTAGGGGTTATCCTGACATTTGCTGTCTACAAGAGAGATCTTCCACCAAGTGCAACACCAAATGAAAGGATTCAAGCAACTGATGGGTATCTTGGTGGGGTCTTTGATGTTGAGTCATTAGTGGAGAAATTACTTCAGCAACTTGCTAGCAAGCAATCTGTTATTGTTAATGTGTATGATACTACAAATCATACTCATCCAATTGGCATGTACGGCTCAAATGTATCAGGGGATGTTTTCTATCATGTCAGCACTCTGAACTTTGGAGACCCTTTCAGGAAGCATGAGATGTACTGCAGGTTCAAACAGAAACCACCTTGGCCATGGTTGGCAATAACTACTTCAATTGGCGTCCTTGTTATTGCACTCCTTGTTGGACACATTTTCCATGCCACCGTGAATCGAATTGCCAAAGTAGAAGATGATTACCGTGAGATGATGGAGCTTAAGAAACGAGCTGAGGCAGCTGATGTTGCAAAATCTCAGTTTCTTGCTACTGTTTCCCATGAGATCAGGACACCAATGAATGGGGTTTTAGGGATGTTGCATATGCTTATGGACACAGATCTAGATGTCACCCAACAGGAATATGTCAGAACGGCGCAGGACAGTGGAAAAGCTCTGGTGTCCCTTATAAACGAGGTTTTGGACCAGGCAAAGATTGAATTTGGTAAGCTAGAACTTGAGGCAGTGCTCTTTGACTTACGGGCAATTTTGGATGATGTATTGTCACTATTTTCCGAGAAGTCTCAGGGAAAAGGAGTAGAGTTGGCAGTTTACGTGTCAGATCAGGTTCCTGAGCGGCTAATAGGCGATCCGGGAAGGTTTCGACAAATAATTACAAATCTCATGGGTAACTCAATTAAGTTCACAGACAAAGGGCATATTTTTGTCAATGTCCATCTTGTTGAGGAGGTTGTCCATTCAATAGAGGTTGACAAGGAATCAAACTCAGAAAACACCTTGAGTGGTTCCCCAGTTGCTAATAATCGCCGGAGCTGGGAAGGGTTCGAGGCTTTCAGTCAAGAGGGACCTCTCGGCTCTTTCTCATCCTCCTCCAATGATCTCATCAATTTGATTGTATCTGTTGAGGATACAGGTGAAGGTATTCCTCTAGATGCCCAATCCCTCATCTTCACTCCATTCATGCAGGTAGGTTCATCCATCTCCCGAAAACATGGGGGAACAGGTATTGGCCTAAGTATTAGCAAATGTTTGGTTGGCCTCATGAATGGAGAAATTGGATTTGTGAGTATACCTAAGATTGGTTCCACTTTCACTTTTACCGCTGTCTTCACCAATGGACTCCCCAGTTCAAATGAATGTAAAGTTCAGCTAAACAACAACCAACCTCAATCTGCATCTTCAGAATTTGAAGGGATGACTGCATTAATCATTGACCCGAGACCTGTTAGAGCGAAAGTTTCTAGATACCACATCCAAAGGCTTGGAATTCACGCCGAAATGGTTTCAGATTTAAACCAAGGTCAGTCAACCATAAGCAGTGGGAATCTAGTTATTAATATGGTCCTGATTGAGCAGGAGGTATGGGATAGAGATTCAGGCATGTCATCCCACTTTGTTAATAACACAAGGAAAGTTGATCATGGGGTTCCTCCAAAGCTGTTCATTCTTGTTAACTCTAGTAGTTCTCTTAAAGCAAGTAGTGTAACCTCAGGTGTTCATAATCCTACTGTCATCACGAAACCTCTAAGAGCAAGTATGCTTGCTGCCTCACTTCAACGAACCATGGGTGTTCAGAACAAGGGAACTCGCAACAGGGAGCTGCAAAGTTTGTCTCTTCGCCATCTTCTTCTTGGGAGGAAAATTCTAATTGTAGATGACAATAGTGTGAACCGCAAAGTTGCAGCTGGTGCTTTGAAAAAGTATGGAGCAGATGTGGTTTGTGTTAGCAGTGGAAAAGAAGCCATCTCTTCACTGAAGCCACCCCATCAGTTCGATGCCTGTTTCATGGATATTCAAATGCCAGAAATGGATGGTTTTGAAGCTACAAAGAGAATCAGAGAAATGGAACATAGTGTGAACATAGAAGTGTCTATGGATGACTTTGAGGTTATTTCAAATTATCACGTGCCCATTTTAGCCATGACTGCAGATGTGATCCAGGCTACACAGGAGGAATGCCTAAGGTGTGGCATGGATGGATATGTTTCAAAACCATTTGAAGCTGAACAGCTTTATAGAGAAGTTTCACGGTTTTTCCAGTCATCTTGA 3069 0.435 MSLLHVVGFGLKVGHLLLVLCCWFGSVVYLNRFSSSGIMDTKMGFLGDVGKIWLKCWEKISGNGCKMYIGSKIVKRALWRKLLLTWVLGWTIASLWIFCCISLQATEKRKETLASMCDERARMLQDQFNVSMNHIQAMSILISTFHHAKSPSAIDQGTFARYTERTAFERPLTSGVAYAVRVLHSEREQFEKQQGWTIKRMDTLEQNPVHKDDYAPEALEPSPIQEEYAPVIFAQDTISHVISVDMLSGKEDRENVLRARESGKGVLTAPFRLLKSNRLGVILTFAVYKRDLPPSATPNERIQATDGYLGGVFDVESLVEKLLQQLASKQSVIVNVYDTTNHTHPIGMYGSNVSGDVFYHVSTLNFGDPFRKHEMYCRFKQKPPWPWLAITTSIGVLVIALLVGHIFHATVNRIAKVEDDYREMMELKKRAEAADVAKSQFLATVSHEIRTPMNGVLGMLHMLMDTDLDVTQQEYVRTAQDSGKALVSLINEVLDQAKIEFGKLELEAVLFDLRAILDDVLSLFSEKSQGKGVELAVYVSDQVPERLIGDPGRFRQIITNLMGNSIKFTDKGHIFVNVHLVEEVVHSIEVDKESNSENTLSGSPVANNRRSWEGFEAFSQEGPLGSFSSSSNDLINLIVSVEDTGEGIPLDAQSLIFTPFMQVGSSISRKHGGTGIGLSISKCLVGLMNGEIGFVSIPKIGSTFTFTAVFTNGLPSSNECKVQLNNNQPQSASSEFEGMTALIIDPRPVRAKVSRYHIQRLGIHAEMVSDLNQGQSTISSGNLVINMVLIEQEVWDRDSGMSSHFVNNTRKVDHGVPPKLFILVNSSSSLKASSVTSGVHNPTVITKPLRASMLAASLQRTMGVQNKGTRNRELQSLSLRHLLLGRKILIVDDNSVNRKVAAGALKKYGADVVCVSSGKEAISSLKPPHQFDACFMDIQMPEMDGFEATKRIREMEHSVNIEVSMDDFEVISNYHVPILAMTADVIQATQEECLRCGMDGYVSKPFEAEQLYREVSRFFQSS 1022
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3698g00008 1022 ProSiteProfiles Histidine kinase domain profile. 444 712 IPR005467 -
Gabi3698g00008 1022 SMART HisKA_10 437 502 IPR003661 GO:0000155|GO:0007165
Gabi3698g00008 1022 SMART REC_2 886 1015 IPR001789 GO:0000160
Gabi3698g00008 1022 ProSiteProfiles CHASE domain profile. 150 376 IPR006189 -
Gabi3698g00008 1022 Gene3D CHASE domain 154 383 IPR042240 -
Gabi3698g00008 1022 FunFam Histidine kinase 4 154 383 - -
Gabi3698g00008 1022 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 491 707 IPR036890 -
Gabi3698g00008 1022 PANTHER TWO-COMPONENT HISTIDINE KINASE 115 1012 - -
Gabi3698g00008 1022 PRINTS Bacterial sensor protein C-terminal signature 637 651 IPR004358 GO:0016310|GO:0016772
Gabi3698g00008 1022 PRINTS Bacterial sensor protein C-terminal signature 672 690 IPR004358 GO:0016310|GO:0016772
Gabi3698g00008 1022 PRINTS Bacterial sensor protein C-terminal signature 655 665 IPR004358 GO:0016310|GO:0016772
Gabi3698g00008 1022 ProSiteProfiles Response regulatory domain profile. 887 1019 IPR001789 GO:0000160
Gabi3698g00008 1022 Gene3D - 405 500 - -
Gabi3698g00008 1022 CDD HATPase_EvgS-ArcB-TorS-like 554 710 - -
Gabi3698g00008 1022 Pfam Response regulator receiver domain 888 1014 IPR001789 GO:0000160
Gabi3698g00008 1022 CDD HisKA 437 498 IPR003661 GO:0000155|GO:0007165
Gabi3698g00008 1022 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 549 710 IPR003594 -
Gabi3698g00008 1022 SMART CHASE_2 150 361 IPR006189 -
Gabi3698g00008 1022 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 422 503 IPR036097 GO:0000155|GO:0007165
Gabi3698g00008 1022 SMART HKATPase_4 549 712 IPR003594 -
Gabi3698g00008 1022 Gene3D - 501 712 IPR036890 -
Gabi3698g00008 1022 Coils Coil 414 434 - -
Gabi3698g00008 1022 CDD PRTases_typeI 837 915 IPR000836 -
Gabi3698g00008 1022 Pfam His Kinase A (phospho-acceptor) domain 437 500 IPR003661 GO:0000155|GO:0007165
Gabi3698g00008 1022 FunFam Histidine kinase 4 409 500 - -
Gabi3698g00008 1022 SUPERFAMILY CheY-like 885 1019 IPR011006 -
Gabi3698g00008 1022 Gene3D - 102 153 - -
Gabi3698g00008 1022 CDD REC_hyHK_CKI1_RcsC-like 888 1015 - -
Gabi3698g00008 1022 ProSiteProfiles Response regulatory domain profile. 740 862 IPR001789 GO:0000160
Gabi3698g00008 1022 SUPERFAMILY CheY-like 736 863 IPR011006 -
Gabi3698g00008 1022 Gene3D - 883 1022 - -
Gabi3698g00008 1022 Pfam CHASE domain 153 349 IPR006189 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3698g00008 Gabi-Chr3698 71881 79151 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3698g00008 1 1021 Miscellaneous Gene Families AT1G27320 67.681 0.0 1402
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Gabi3698g00008 CHASE 3.5e-37 CL0165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3698g00008 K14489 - gmx:100776798 1789.24