Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3698g00006 ATGACATCTGGTTATGAATACGATATTGAAGATCTGTATCAAGAAGCTCAAACGAGATGGCTGAAGCCTGCAGAAGTGATGTACATTTTAAAGAATCATGAAAAGTACCAGTTCACCCATGAACCACCGCAACAGCCAACCAGTGGATCCCTGTTTCTGTTTAATAAAAGAGTCTTGCGCTTCTTCCGTCGAGATGGTCATAGCTGGCGGAAGAAAAGAGATGGAAGAACTGTGGGAGAAGCACACGAACGGCTTAAGGTTGGAAATGTTGAAGCCTTAAATTGTTACTATGCACATGGAGAGCAGAACCCTACTTTCCAAAGGCGGAGCTATTGGATGTTGGATCCGGCATATGAGCATATTGTTCTTGTGCATTACAGAGAAACAAATGAGGGAAAGCCCAGTTCTGGGCCTGGCATACAATTGTCACCAGGTTCCTCTTCTGCATTTAGTCAGAGCCCTGGGTCAACAACATCCATACTTGGTGATTCATATGAACCTAATCAGAGTTTCTCCACTGGATCTGTAGAAGTTTCCTCTGATATATTAATTGGGAACAATGGAATGGGTCACTTGGATGGAACAGATACAGAATCAGGAACCTCAACTGAACTCGAGGTTACCCATGCTTTGCGCCGATTGGAGGAGCAATTAAGTTTGAACGAGGACAGCCTTAAAGAAATTCCTCCCTTCTGCAATGAGCACGAAACTGCACATGATTCAAACCCTCAAAACAATCAAGGGGTGATCTACATGCAAGAGAAATCTGCAACTTTCCATGGACCAGATGAACATGGGCTATTTTATGATGGATATAATGGAAGACAAGATGGAAATGAAGAGGCTTTATCTTGGACAAAGATGCTGGAATCATGTAAGTCCTCATCTGCGGCCAAGTTACCACAGAAAAATGCATATATGCCAGCTGGAAATGAAAACTCACCATCTTCTTCAAGAAGGGAACCAGTTGCCAACCAGGAAAACAATAACTGGCTAAACTTCAACAGTAATAATGCTGAAAACTATGTTTTCTCACTACCTCAAGGCATTGGTGGAGTCAAATTTCGTCCATATTCTTCTATGTTGGAAACACAAGAAACTAATTCTGACTACTATGCAACATTGTTTGACCAAAGCCAAATTGGAGCACCTCTGGATGCAGATTCAAGCTTGACTGTTGCACAAAAACAGAAATTTAATATTAAGACAGTCTCCCCAGAGTGGGGTTATGCCACTGAGACTACAAAGGTAATCATTGTTGGGTCTTTCCTTTGTCATCCCTCGGATTCTGCCTGGGCATGTATGTTTGGTGATATTGAAGTTCCTGTTGAGATGATTCAGGATGGTGTAATCTGTTGTGAAGCTCCATCTCACCTTCCTGGAAAGGTTACTCTGTGCATTACTTCTGGAAACCGGGAGTCCTGCAGCGAAGTCAGAGAGTTTGAGTATCGGGATAAGACCAATAGTTGCACCCACTGTACTCCATTTGAAAAAGAAGCCTCTAGAAGTCCAGAAGAACTGTTATTACTTGTTAGGTTTGGGCAGATGCTCCTTTCCGTGTCAACTATAAACAATGACAACATAGAACCTGGAGCTACTCTCATAAAACACAAAGCTGATGATGATTCATGGAGCCATATAATAGAGGCTCTTCTAATTGGCAGTGGAACTTCATCTGGTACTATTGATTGGCTTCTTGAAGAGCTTCTAAAGGATAAGCTGCAGTTGTGGCTTTCTTGCAGATCCCAGGAAAGAGATGAAGAGACAGGCTGTTCTTTGTCCAAGAAAGAGCAGGGTATTATTCACATGGTTGCTGGGTTGGGTTTTGAGTGGGCCTTGAACCCTATTCTTAGTTGTGGTGTGAATATAAATTTCCGCGACATCAATGGGTGGACTGCGCTTCATTGGGCTGCACGTTTTGGAAGGGAAAAAATGGTTGCGTCGCTTATAGCTTCTGGTGCATCTGCTGGAGCAGTGACAGATCCAAGTGCACAAGATCCAATCGGCAAAACTGCTGCATCTATTGCAGCCAGCAGTGGGCATAAGGGATTGGCAGGATATCTTTCAGAGGTAGCTCTAACGAGTCATCTCTCATCTCTTACACTGGAAGAGAGTGAGCTATCTAGAAATTCTGCTGAGCTTCAAGCAGATTTAACTGTTAGTAGTGTCTCCAATGAAAACCTTGCTTCCAGTGAGGATCAGGTTTCACTCAAAGATACCTTGGCTGCTATCAGAAATGTAACTCAGGCAGCTGCACGGATACAATCTGCGTTTCGTTCACATTCATTTAGAAAACGGAGAGCGAGAGAAGCAGCTGATGGTATAAATGGGTATGGTATCAATGCAGGTAACATTGGTAACATTCCAGAGCTTTCTGCTCTGTCAAAACTTGCCTTTCATAACTCACGTGAACACAATTCAGCTGCCTTATCAATTCAGAAGAAATATCGTGGTTGGAAAGGTCGCAAAGATTTCTTAGCATTGCGCCAAAAAGTAGTGAAGATTCAGGCTCATGTGAGGGGTTACCAGGTTAGGAAGCATTACAAGGTAATATGGGCTGTTGGAATCTTGGACAAGGTTGTGCTACGATGGCGGAGAAAAGGAGTTGGTCTTCGAGGTTTCCGACAAGAGATGGAGACAATTGATGAAAATGAAGATGAAGATGAAGATATTCTCAAGGTGTTCCGAAAACAGAAAGTAGATGTAGAAATTAAAGAGGCTGTTTCACGGGTGCTGTCCATGGTCGACTCTCCAGATGCTCAACAGCAATATCATCGCATGCTTGAGAAGTATCGTCAGGCAAAGGCTGAACGCGCGGGTACGAGTGAAGAAGCATCATTATCAACTTCTGAAATGGATTTTTTTAATATGGAAGATGATTTTTATCAATTTCCCTGGGAGCCACGCTAG 2910 0.4302 MTSGYEYDIEDLYQEAQTRWLKPAEVMYILKNHEKYQFTHEPPQQPTSGSLFLFNKRVLRFFRRDGHSWRKKRDGRTVGEAHERLKVGNVEALNCYYAHGEQNPTFQRRSYWMLDPAYEHIVLVHYRETNEGKPSSGPGIQLSPGSSSAFSQSPGSTTSILGDSYEPNQSFSTGSVEVSSDILIGNNGMGHLDGTDTESGTSTELEVTHALRRLEEQLSLNEDSLKEIPPFCNEHETAHDSNPQNNQGVIYMQEKSATFHGPDEHGLFYDGYNGRQDGNEEALSWTKMLESCKSSSAAKLPQKNAYMPAGNENSPSSSRREPVANQENNNWLNFNSNNAENYVFSLPQGIGGVKFRPYSSMLETQETNSDYYATLFDQSQIGAPLDADSSLTVAQKQKFNIKTVSPEWGYATETTKVIIVGSFLCHPSDSAWACMFGDIEVPVEMIQDGVICCEAPSHLPGKVTLCITSGNRESCSEVREFEYRDKTNSCTHCTPFEKEASRSPEELLLLVRFGQMLLSVSTINNDNIEPGATLIKHKADDDSWSHIIEALLIGSGTSSGTIDWLLEELLKDKLQLWLSCRSQERDEETGCSLSKKEQGIIHMVAGLGFEWALNPILSCGVNINFRDINGWTALHWAARFGREKMVASLIASGASAGAVTDPSAQDPIGKTAASIAASSGHKGLAGYLSEVALTSHLSSLTLEESELSRNSAELQADLTVSSVSNENLASSEDQVSLKDTLAAIRNVTQAAARIQSAFRSHSFRKRRAREAADGINGYGINAGNIGNIPELSALSKLAFHNSREHNSAALSIQKKYRGWKGRKDFLALRQKVVKIQAHVRGYQVRKHYKVIWAVGILDKVVLRWRRKGVGLRGFRQEMETIDENEDEDEDILKVFRKQKVDVEIKEAVSRVLSMVDSPDAQQQYHRMLEKYRQAKAERAGTSEEASLSTSEMDFFNMEDDFYQFPWEPR 969
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3698g00006 969 Gene3D - 490 694 IPR036770 -
Gabi3698g00006 969 Pfam Ankyrin repeats (3 copies) 611 689 IPR002110 GO:0005515
Gabi3698g00006 969 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 8 937 - -
Gabi3698g00006 969 SMART iq_5 827 849 IPR000048 GO:0005515
Gabi3698g00006 969 SMART iq_5 804 826 IPR000048 GO:0005515
Gabi3698g00006 969 SMART iq_5 746 768 IPR000048 GO:0005515
Gabi3698g00006 969 FunFam Calmodulin-binding transcription activator 4 isoform A 511 694 - -
Gabi3698g00006 969 SUPERFAMILY Ankyrin repeat 597 690 IPR036770 -
Gabi3698g00006 969 ProSiteProfiles IQ motif profile. 828 853 IPR000048 GO:0005515
Gabi3698g00006 969 Pfam IQ calmodulin-binding motif 830 849 IPR000048 GO:0005515
Gabi3698g00006 969 Pfam IQ calmodulin-binding motif 807 825 IPR000048 GO:0005515
Gabi3698g00006 969 SMART CG_1_2 12 130 IPR005559 GO:0003677
Gabi3698g00006 969 MobiDBLite consensus disorder prediction 134 173 - -
Gabi3698g00006 969 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 794 851 IPR027417 -
Gabi3698g00006 969 SMART ANK_2a 629 658 IPR002110 GO:0005515
Gabi3698g00006 969 SMART ANK_2a 668 697 IPR002110 GO:0005515
Gabi3698g00006 969 FunFam Calmodulin-binding transcription activator 2 804 852 - -
Gabi3698g00006 969 FunFam Calmodulin-binding transcription activator 2 394 488 - -
Gabi3698g00006 969 Gene3D Immunoglobulins 394 489 IPR013783 -
Gabi3698g00006 969 ProSiteProfiles IQ motif profile. 748 773 IPR000048 GO:0005515
Gabi3698g00006 969 Pfam IPT/TIG domain 401 483 IPR002909 -
Gabi3698g00006 969 ProSiteProfiles Ankyrin repeat profile. 629 661 IPR002110 GO:0005515
Gabi3698g00006 969 SUPERFAMILY E set domains 400 484 IPR014756 -
Gabi3698g00006 969 ProSiteProfiles IQ motif profile. 805 834 IPR000048 GO:0005515
Gabi3698g00006 969 MobiDBLite consensus disorder prediction 300 324 - -
Gabi3698g00006 969 ProSiteProfiles Ankyrin repeat region circular profile. 629 655 - -
Gabi3698g00006 969 CDD IPT 401 485 - -
Gabi3698g00006 969 ProSiteProfiles CG-1 DNA-binding domain profile. 9 135 IPR005559 GO:0003677
Gabi3698g00006 969 MobiDBLite consensus disorder prediction 129 173 - -
Gabi3698g00006 969 Gene3D - 804 853 - -
Gabi3698g00006 969 Pfam CG-1 domain 15 128 IPR005559 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3698g00006 Gabi-Chr3698 53098 63132 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3698g00006 3 962 CAMTA Transcription Factor Family AT1G67310 52.110 0.0 940
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Gabi3698g00006 CG-1 2.4e-48 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3698g00006 K21596 - gmx:100786880 1522.29