Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3698g00004 ATGACATCTGGTTATGAATACGATATTGAAGATCTGTATCAAGAAGCTCAAACGAGATGGCTGAAGCCTGCAGAAGTGATGTACATTTTAAAGAATCATGAAAAGTACCAGTTCACCCATGAACCACCGCAACAGCCAACCAGTGGATCCCTGTTTCTGTTTAATAAAAGAGTCTTGCGCTTCTTCCGTCGAGATGGTCATAGCTGGCGGAAGAAAAGAGATGGAAGAACTGTGGGAGAAGCACACGAACGGCTTAAGGTTGGAAATGTTGAAGCCTTAAATTGTTACTATGCACATGGAGAGCAGAACCCTACTTTCCAAAGGCGGAGCTATTGGATGTTGGATCCGGCATATGAGCATATTGTTCTTGTGCATTACAGAGAAACAAATGAGGGAAAGCCCAGTTCTGGGCCTGGCATACAATTGTCACCAGGTTCCTCTTCTGCATTTAGTCAGAGCCCTGGGTCAACAACATCCATACTTGGTGATTCATATGAACCTAATCAGAGTTTCTCCACTGGATCTGTAGAAGTTTCCTCTGATATATTAATTGGGAACAATGGAATGGGTCACTTGGATGGAACAGATACAGAATCAGGAACCTCAACTGAACTCGAGGTTACCCATGCTTTGCGCCGATTGGAGGAGCAATTAAGTTTGAACGAGGACAGCCTTAAAGAAATTCCTCCCTTCTGCAATGAGCACGAAACTGCACATGATTCAAACCCTCAAAACAATCAAGGGGTGATCTACATGCAAGAGAAATCTGCAACTTTCCATGGACCAGATGAACATGGGCTATTTTATGATGGATATAATGGAAGACAAGGTGATAGTGGTGAATGTTATCATGAATTACTAGACCATGATTGCCCAGATGGAAATGAAGAGGCTTTATCTTGGACAAAGATGCTGGAATCATGTAAGTCCTCATCTGCGGCCAAGTTACCACAGAAAAATGCATATATGCCAGCTGGAAATGAAAACTCACCATCTTCTTCAAGAAGGGAACCAGTTGCCAACCAGGAAAACAATAACTGGCTAAACTTCAACAGTAATAATGCTGAAAACTATGTTTTCTCACTACCTCAAGGCATTGGTGGAGTCAAATTTCGTCCATATTCTTCTATGTTGGAAACACAAGAAACTAATTCTGACTACTATGCAACATTGTTTGACCAAAGCCAAATTGGAGCACCTCTGGATGCAGATTCAAGCTTGACTGTTGCACAAAAACAGAAATTTAATATTAAGACAGTCTCCCCAGAGTGGGGTTATGCCACTGAGACTACAAAGGTAATCATTGTTGGGTCTTTCCTTTGTCATCCCTCGGATTCTGCCTGGGCATGTATGTTTGGTGATATTGAAGTTCCTGTTGAGATGATTCAGGATGGTGTAATCTGTTGTGAAGCTCCATCTCACCTTCCTGGAAAGGTTACTCTGTGCATTACTTCTGGAAACCGGGAGTCCTGCAGCGAAGTCAGAGAGTTTGAGTATCGGGATAAGACCAATAGTTGCACCCACTGTACTCCATTTGAAAAAGAAGCCTCTAGAAGTCCAGAAGAACTGTTATTACTTGTTAGGTTTGGGCAGATGCTCCTTTCCGTGTCAACTATAAACAATGACAACATAGAACCTGGAGCTACTCTCATAAAACACAAAGCTGATGATGATTCATGGAGCCATATAATAGAGGCTCTTCTAATTGGCAGTGGAACTTCATCTGGTACTATTGATTGGCTTCTTGAAGAGCTTCTAAAGGATAAGCTGCAGTTGTGGCTTTCTTGCAGATCCCAGGAAAGAGATGAAGAGACAGGCTGTTCTTTGTCCAAGAAAGAGCAGGGTATTATTCACATGGTTGCTGGGTTGGGTTTTGAGTGGGCCTTGAACCCTATTCTTAGTTGTGGTGTGAATATAAATTTCCGCGACATCAATGGGTGGACTGCGCTTCATTGGGCTGCACGTTTTGGAAGGGAAAAAATGGTTGCGTCGCTTATAGCTTCTGGTGCATCTGCTGGAGCAGTGACAGATCCAAGTGCACAAGATCCAATCGGCAAAACTGCTGCATCTATTGCAGCCAGCAGTGGGCATAAGGGATTGGCAGGATATCTTTCAGAGGTAGCTCTAACGAGTCATCTCTCATCTCTTACACTGGAAGAGAGTGAGCTATCTAGAAATTCTGCTGAGCTTCAAGCAGATTTAACTGTTAGTAGTGTCTCCAATGAAAACCTTGCTTCCAGTGAGGATCAGGTTTCACTCAAAGATACCTTGGCTGCTATCAGAAATGTAACTCAGGCAGCTGCACGGATACAATCTGCGTTTCGTTCACATTCATTTAGAAAACGGAGAGCGAGAGAAGCAGCTGATGGTATAAATGGGTATGGTATCAATGCAGGTAACATTGGTAACATTCCAGAGCTTTCTGCTCTGTCAAAACTTGCCTTTCATAACTCACGTGAACACAATTCAGCTGCCTTATCAATTCAGAAGAAATATCGTGGTTGGAAAGGTCGCAAAGATTTCTTAGCATTGCGCCAAAAAGTAGTGAAGATTCAGGCTCATGTGAGGGGTTACCAGGTTAGGAAGCATTACAAGGTAATATGGGCTGTTGGAATCTTGGACAAGGTTGTGCTACGATGGCGGAGAAAAGGAGTTGGTCTTCGAGGTTTCCGACAAGAGATGGAGACAATTGATGAAAATGAAGATGAAGATGAAGATATTCTCAAGGTGTTCCGAAAACAGAAAGTAGATGTAGAAATTAAAGAGGCTGTTTCACGGGTGCTGTCCATGGTCGACTCTCCAGATGCTCAACAGCAATATCATCGCATGCTTGAGAAGTATCGTCAGGCAAAGGCTGAACGCGCGGGTACGAGTGAAGAAGCATCATTATCAACTTCTGAAATGGATTTTTTTAATATGGAAGATGATTTTTATCAATTTCCCTGGGAGCCACGCTAG 2958 0.4297 MTSGYEYDIEDLYQEAQTRWLKPAEVMYILKNHEKYQFTHEPPQQPTSGSLFLFNKRVLRFFRRDGHSWRKKRDGRTVGEAHERLKVGNVEALNCYYAHGEQNPTFQRRSYWMLDPAYEHIVLVHYRETNEGKPSSGPGIQLSPGSSSAFSQSPGSTTSILGDSYEPNQSFSTGSVEVSSDILIGNNGMGHLDGTDTESGTSTELEVTHALRRLEEQLSLNEDSLKEIPPFCNEHETAHDSNPQNNQGVIYMQEKSATFHGPDEHGLFYDGYNGRQGDSGECYHELLDHDCPDGNEEALSWTKMLESCKSSSAAKLPQKNAYMPAGNENSPSSSRREPVANQENNNWLNFNSNNAENYVFSLPQGIGGVKFRPYSSMLETQETNSDYYATLFDQSQIGAPLDADSSLTVAQKQKFNIKTVSPEWGYATETTKVIIVGSFLCHPSDSAWACMFGDIEVPVEMIQDGVICCEAPSHLPGKVTLCITSGNRESCSEVREFEYRDKTNSCTHCTPFEKEASRSPEELLLLVRFGQMLLSVSTINNDNIEPGATLIKHKADDDSWSHIIEALLIGSGTSSGTIDWLLEELLKDKLQLWLSCRSQERDEETGCSLSKKEQGIIHMVAGLGFEWALNPILSCGVNINFRDINGWTALHWAARFGREKMVASLIASGASAGAVTDPSAQDPIGKTAASIAASSGHKGLAGYLSEVALTSHLSSLTLEESELSRNSAELQADLTVSSVSNENLASSEDQVSLKDTLAAIRNVTQAAARIQSAFRSHSFRKRRAREAADGINGYGINAGNIGNIPELSALSKLAFHNSREHNSAALSIQKKYRGWKGRKDFLALRQKVVKIQAHVRGYQVRKHYKVIWAVGILDKVVLRWRRKGVGLRGFRQEMETIDENEDEDEDILKVFRKQKVDVEIKEAVSRVLSMVDSPDAQQQYHRMLEKYRQAKAERAGTSEEASLSTSEMDFFNMEDDFYQFPWEPR 985
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3698g00004 985 ProSiteProfiles IQ motif profile. 821 850 IPR000048 GO:0005515
Gabi3698g00004 985 Pfam IQ calmodulin-binding motif 823 841 IPR000048 GO:0005515
Gabi3698g00004 985 Pfam IQ calmodulin-binding motif 846 865 IPR000048 GO:0005515
Gabi3698g00004 985 Gene3D - 820 869 - -
Gabi3698g00004 985 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 8 953 - -
Gabi3698g00004 985 SMART CG_1_2 12 130 IPR005559 GO:0003677
Gabi3698g00004 985 MobiDBLite consensus disorder prediction 134 173 - -
Gabi3698g00004 985 ProSiteProfiles Ankyrin repeat region circular profile. 645 671 - -
Gabi3698g00004 985 Gene3D - 506 710 IPR036770 -
Gabi3698g00004 985 FunFam Calmodulin-binding transcription activator 2 410 504 - -
Gabi3698g00004 985 Pfam CG-1 domain 15 128 IPR005559 GO:0003677
Gabi3698g00004 985 Pfam IPT/TIG domain 417 499 IPR002909 -
Gabi3698g00004 985 SUPERFAMILY E set domains 416 500 IPR014756 -
Gabi3698g00004 985 MobiDBLite consensus disorder prediction 316 340 - -
Gabi3698g00004 985 Gene3D Immunoglobulins 410 505 IPR013783 -
Gabi3698g00004 985 ProSiteProfiles IQ motif profile. 844 869 IPR000048 GO:0005515
Gabi3698g00004 985 SUPERFAMILY Ankyrin repeat 613 706 IPR036770 -
Gabi3698g00004 985 CDD IPT 417 501 - -
Gabi3698g00004 985 FunFam Calmodulin-binding transcription activator 2 820 868 - -
Gabi3698g00004 985 ProSiteProfiles CG-1 DNA-binding domain profile. 9 135 IPR005559 GO:0003677
Gabi3698g00004 985 ProSiteProfiles IQ motif profile. 764 789 IPR000048 GO:0005515
Gabi3698g00004 985 MobiDBLite consensus disorder prediction 129 173 - -
Gabi3698g00004 985 Pfam Ankyrin repeats (3 copies) 627 705 IPR002110 GO:0005515
Gabi3698g00004 985 FunFam Calmodulin-binding transcription activator 4 isoform A 527 710 - -
Gabi3698g00004 985 ProSiteProfiles Ankyrin repeat profile. 645 677 IPR002110 GO:0005515
Gabi3698g00004 985 SMART iq_5 762 784 IPR000048 GO:0005515
Gabi3698g00004 985 SMART iq_5 843 865 IPR000048 GO:0005515
Gabi3698g00004 985 SMART iq_5 820 842 IPR000048 GO:0005515
Gabi3698g00004 985 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 810 867 IPR027417 -
Gabi3698g00004 985 SMART ANK_2a 645 674 IPR002110 GO:0005515
Gabi3698g00004 985 SMART ANK_2a 684 713 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3698g00004 Gabi-Chr3698 53098 63132 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3698g00004 3 978 CAMTA Transcription Factor Family AT1G67310 52.502 0.0 939
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Gabi3698g00004 CG-1 2.5e-48 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3698g00004 K21596 - gmx:100786880 1557.73