Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3694g00001 ATGGCTCCAATGAGTCTCCCACCAGGATTTAGGTTCCACCCCACAGATGAAGAGCTTGTTGCTTACTACTTAGAAAGAAAAATAACTGGTCGCTCAATAGAACTTGACATCATTGCTGAAGTTGATCTATACAAATGTGAACCTTGGGATTTACCAGATAAATCATTCCTCCCAAGTAAAGACATGGAGTGGTATTTTTATAGTCCAAGAGATAGAAAGTACCCAAATGGATCAAGAACTAACAGAGCAACAAGAGCTGGTTATTGGAAAGCTACAGGGAAAGATAGGCCAGTCCACTCTCAAAAGAAGCCACTTGGTATGAAGAAGACATTGGTATATTATAGAGGAAGAGCACCACATGGGATTAGAACCAACTGGGTTATGCACGAATACCGCTTAATTGAATCTGTGCCTTGTGCTGCTCATTCATCTTTAAAGGATTCCTATTCATTGTGTCGAATTTTCAAGAAGACTGTTCAAATTCCATCCAAACCTAAACAAGACGAACAAATCGAGGAAGCAAAGAAGGAATTGATGCGGGTCTCAGAAGAACATTTATTAGGTGAAGACTCAAGTGGCACTGAGATTTCCAAAGAAATGGAAACCGTGAATGAGAAAATTCTCAATCATGAAAATCCTAAATTTCCATGTGACGCTTCTTCTTCTGATCTCACTCAAGGAACATGTACACCCACGGATACGGGTATAGCAGACGATTTTCAAGCACAATTTGCTTGTGATGAAGCAAATAGTGTAGCTAATTCTTATCCAATAGGAATTGGTTACCCCTCAAATCTATTTCAGGATATAGAAATACCTATCTTTGGTGGCATGCATTATCAACTCCCATACACCCCTTTGGTGCTGGAAGATTTCCCACAAATAAATTTACCAGAGACAAAGTCAATGAAGCCCGAAATGACTGATGATTGCATATTATATGACAAGTGCAAGGACTATCTGAATGGAACACTAGAAGAGATCATCTCTTTGTGTTCCTCTCAAGATAAATCTGTCGCTTTTCCCATGCTAGAATGA 1038 0.394 MAPMSLPPGFRFHPTDEELVAYYLERKITGRSIELDIIAEVDLYKCEPWDLPDKSFLPSKDMEWYFYSPRDRKYPNGSRTNRATRAGYWKATGKDRPVHSQKKPLGMKKTLVYYRGRAPHGIRTNWVMHEYRLIESVPCAAHSSLKDSYSLCRIFKKTVQIPSKPKQDEQIEEAKKELMRVSEEHLLGEDSSGTEISKEMETVNEKILNHENPKFPCDASSSDLTQGTCTPTDTGIADDFQAQFACDEANSVANSYPIGIGYPSNLFQDIEIPIFGGMHYQLPYTPLVLEDFPQINLPETKSMKPEMTDDCILYDKCKDYLNGTLEEIISLCSSQDKSVAFPMLE 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3694g00001 345 Coils Coil 164 184 - -
Gabi3694g00001 345 ProSiteProfiles NAC domain profile. 6 157 IPR003441 GO:0003677|GO:0006355
Gabi3694g00001 345 FunFam Nac domain-containing protein 86 15 160 - -
Gabi3694g00001 345 SUPERFAMILY NAC domain 3 157 IPR036093 GO:0003677|GO:0006355
Gabi3694g00001 345 Gene3D NAC domain 15 161 IPR036093 GO:0003677|GO:0006355
Gabi3694g00001 345 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 5 204 - -
Gabi3694g00001 345 Pfam No apical meristem (NAM) protein 7 133 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3694g00001 Gabi-Chr3694 13323 16773 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3694g00001 1 342 NAC Transcription Factor Family AT1G54330 51.895 1.56e-102 302
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gabi3694g00001 NAM 1.9e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3694g00001 - - gmx:100808325 628.632