Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3692g00044 ATGAAGGTGGCTGGTAAGATGAGGAAAGAGGTTTTCTTCTTGTGGTGGTGGTTTAGAGTGGCTGTACAGCTCTGCTTCTTTCTCGGTGTCTATTCTGAGAAGACCTCATTCAGAAGTGGTTTAAGGGGGACCAACAGCCTAGGATTTGTTCCTTCTCCAGTCAAACTGAATACCGAAAATCCTAAGCAGGTGGTGATTGATAACGGCATCGTTTCCATCAACTTGGCAAATCCCGAGGGCTATATCCTTGGAATATCATATAATGGAATTGAAAATGTGCTTGACGCTCGGAATGAAGACAACGATAGAGGGTACATGGACGTCGTTTGGAAGGGACCAGGACAATCTGGCGGTTTTCAGAGAATCCGCGGGACAAGTTTCTCAGTAATGGCAGCCACCGAGAATATAGTAGAGGTTTCATTTTTAAGAACATGGACATCTTCTATGCGAGGCTCAAGTGTCCCTATAAACATAGACAAAAGGTATATATTGCGAAGGGGCGATTCCGGGTTTTACTCATACGTAATATTTGAGCGACCAGAAGGATTACCTGCAGTTGGGGTTGATCAAATTAGATTGGTATTCAAGCTCAACAGAGACAGGTTCAACTATATGGCTATATCAGATACTAGGCAAAGGAGAATGCCATCGATGAGAGATAGAGAAACAGGTCAAAGGCTGGCTTATCCTGAAGCTGTTCTCTTAACCCATCCATCTAACCCACAATTTAGGGGAGAGGTGGATGACAAATACCAATACTCTACTGAGAACACAGACTGCAAAGTTCATGGCTGGATAACGGCAGATTCTGAAGCACCCGTGGGTTTCTGGATGATAACACCCAGTAACGAGTTCCAAAATGCTGGGCCCATTAAGCAAGATCTCACCTCTCATGTTGGCCCCACTACCCTCTCCATGTTTGTGAGCACCCACTATGCTGGCAAAGGGGTAAACATGAAATTTCAACAAGGCGAGACATATAAAAAAGTTTTCGGCCCTGTTTTTGTCTACCTCAACTCTGCTCCAAATAATGTTCGTTTACAAACTCTGTGGTCAGATGCGGTGCGACAGCTATCTAATGAAGTCAAAAGCTGGCCTTATGACTTCCCTCGTTCAAAAGATTTCCTTCCACGCAATCAACGAGGAACAGTATCAGGACGGTTACAAGTCCAAGATGGGTATATAGGAAAGAGATCTCAAAATGCTATCAATGCTTACATTGGTCTAGCTTTGCCTGGAAATGCTGGATCATGGCAGAAAGAAAGCAAGGGTTACCAATTCTGGACCCGAACAGACAGCAATGGATACTTCGTAATAAAAAATATAGTACCTGGGGTTTACAACTTGTATGGGTGGGTTCCTGGCTTTATTGGAGATTACAAATACTATGCTCAAATCACCATCACACCTGGATGTACCATCAAATTGGATTCACTTGTTTATAGTCCTCCAAGAAATGGTCCTACTCTTTGGGAAATTGGCTTCCCAGATCGCTCGGCTGCAGAATTCCATGTCCCAGATCCTTACCCTACCCTCATGAACTATTTATACAAGAATGATGACAGAGACAAGTTCAGGCAATACGGATTGTGGGAACGTTACGCTGATTTATATCCAAATCATGATCTCGTTTACACGGTTGGTGTTAACAACTATAAAAAGGATTGGTTTTTTGCTCATGTTCCCAGGAGCTTGGAAAATAATACATACCAGCCAACCATATGGCAGATTAGATTTGAACTTCAAAATAACATACTGAGGGGAACCTACACACTACAACTGGCCCTGGCATCCTCCTCTAATGCTGAAGTACAGGTTAGGTTCAATGACCCGAGTGCTAATCCACCCCACTTCACAACAGGGCTAATAGGCGATGACAATGCCATAGCAAGGCACGGCATCCATGGATTGCATAGGCTGTATAGCATAAGTATAGCTAGTGATCATTTGGTTCAAGGAAAGAACACAATCTATTTGAGGCAACCAAGAGCCAGAGAAGCTTTCCAAGGAGTTATGTATGATTATATTCGCTTAGAAAGCCCTCCAACTCCAGCTAATTGA 2061 0.4343 MKVAGKMRKEVFFLWWWFRVAVQLCFFLGVYSEKTSFRSGLRGTNSLGFVPSPVKLNTENPKQVVIDNGIVSINLANPEGYILGISYNGIENVLDARNEDNDRGYMDVVWKGPGQSGGFQRIRGTSFSVMAATENIVEVSFLRTWTSSMRGSSVPINIDKRYILRRGDSGFYSYVIFERPEGLPAVGVDQIRLVFKLNRDRFNYMAISDTRQRRMPSMRDRETGQRLAYPEAVLLTHPSNPQFRGEVDDKYQYSTENTDCKVHGWITADSEAPVGFWMITPSNEFQNAGPIKQDLTSHVGPTTLSMFVSTHYAGKGVNMKFQQGETYKKVFGPVFVYLNSAPNNVRLQTLWSDAVRQLSNEVKSWPYDFPRSKDFLPRNQRGTVSGRLQVQDGYIGKRSQNAINAYIGLALPGNAGSWQKESKGYQFWTRTDSNGYFVIKNIVPGVYNLYGWVPGFIGDYKYYAQITITPGCTIKLDSLVYSPPRNGPTLWEIGFPDRSAAEFHVPDPYPTLMNYLYKNDDRDKFRQYGLWERYADLYPNHDLVYTVGVNNYKKDWFFAHVPRSLENNTYQPTIWQIRFELQNNILRGTYTLQLALASSSNAEVQVRFNDPSANPPHFTTGLIGDDNAIARHGIHGLHRLYSISIASDHLVQGKNTIYLRQPRAREAFQGVMYDYIRLESPPTPAN 686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3692g00044 686 SUPERFAMILY Galactose mutarotase-like 58 342 IPR011013 GO:0003824|GO:0005975|GO:0030246
Gabi3692g00044 686 SUPERFAMILY Galactose-binding domain-like 486 679 IPR008979 -
Gabi3692g00044 686 Gene3D - 487 679 - -
Gabi3692g00044 686 Gene3D - 376 478 - -
Gabi3692g00044 686 FunFam Rhamnogalacturonate lyase B 377 476 - -
Gabi3692g00044 686 SUPERFAMILY Starch-binding domain-like 376 478 IPR013784 GO:0030246
Gabi3692g00044 686 CDD RGL4_C 491 679 - -
Gabi3692g00044 686 CDD RGL4_M 380 479 IPR029413 -
Gabi3692g00044 686 Pfam Polysaccharide lyase family 4, domain III 489 678 IPR029411 -
Gabi3692g00044 686 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 56 682 - -
Gabi3692g00044 686 Pfam Rhamnogalacturonate lyase family 53 247 IPR010325 -
Gabi3692g00044 686 CDD RGL4_N 57 341 - -
Gabi3692g00044 686 Pfam Polysaccharide lyase family 4, domain II 404 476 IPR029413 -
Gabi3692g00044 686 Gene3D - 56 356 IPR014718 GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3692g00044 Gabi-Chr3692 584524 590457 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3692g00044 52 681 Polysaccharide Lyase AT1G09890 55.521 0.0 723
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3692g00044 K18195 - gmx:100776664 985.326