Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3692g00037 ATGGGAAGAGGTAAGATTGTGATTCGAAGGATCGACAATTCCACAAGCAGGCAAGTGACTTTCTCAAAGAGGAGAAAGGGATTGATCAAGAAAGCAAAAGAGCTAGCAATCCTCTGCGATGCAGAAGTTGGACTTATGATATACTCCAGCACTGGGAAGCTTTACGAATATGCAAGCACCAGCATGAAATCAGTGATCGAGAGATATAACATAAGCAAGGAGGCACATCAACAACGGACAAATCCAGAATCCGAAGTCAAGTTTTGGCAAAGGGAGGCAGAAATTTTAAGGCAGCAAATACAGAATCTACAAGAAAACCATCGGCAATTGATGGGAGAACAGCTTTACGGTTTGAGTGTCAGAAACCTACAAGATCTAGAGAATCAACTGGAAATGAGTCTCCAAGGTGTCCGCATGAAAAAGGAACAAATTCTTACGGATGAAATCCAAGAGCTGAATCGAAAGGGCAACATTATCCATCAGGAAAATGTGGAACTTTATAAGAAGGTAAACCTCATTCAACAAGAAAATACACAACTATGCAAAAAGGTCTATGACACAGCTGATATGGCCACAACAAGCAAAAATGCATTTGTTCCACTTCCATATGGTATTCATGCAGGAGGGGATCCATATGCATTCATCCAACTTCAGTTATCCCAGCCAGAGCAAGAAGCCTGTGAGACATCAGGCAGTGCCACAAAATGA 708 0.4181 MGRGKIVIRRIDNSTSRQVTFSKRRKGLIKKAKELAILCDAEVGLMIYSSTGKLYEYASTSMKSVIERYNISKEAHQQRTNPESEVKFWQREAEILRQQIQNLQENHRQLMGEQLYGLSVRNLQDLENQLEMSLQGVRMKKEQILTDEIQELNRKGNIIHQENVELYKKVNLIQQENTQLCKKVYDTADMATTSKNAFVPLPYGIHAGGDPYAFIQLQLSQPEQEACETSGSATK 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3692g00037 235 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gabi3692g00037 235 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Gabi3692g00037 235 Gene3D - 13 95 IPR036879 GO:0003677|GO:0046983
Gabi3692g00037 235 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 168 - -
Gabi3692g00037 235 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Gabi3692g00037 235 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Gabi3692g00037 235 Coils Coil 123 143 - -
Gabi3692g00037 235 Pfam K-box region 81 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gabi3692g00037 235 Coils Coil 86 113 - -
Gabi3692g00037 235 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Gabi3692g00037 235 FunFam MADS-box transcription factor MADS-MC 13 85 - -
Gabi3692g00037 235 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gabi3692g00037 235 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gabi3692g00037 235 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Gabi3692g00037 235 SUPERFAMILY SRF-like 2 92 IPR036879 GO:0003677|GO:0046983
Gabi3692g00037 235 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3692g00037 Gabi-Chr3692 496103 520312 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3692g00037 1 233 MADS-box Gene Family AT2G22630 60.944 4.32e-97 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Gabi3692g00037 K-box 1.1e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3692g00037 K09264 - gmx:100795778 363.999