Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3692g00022 ATGGAGCTTTCTCAACTTGGTTTTCTGGAGGAACTACTTGCTCCAAGAAAAGACACTTGGAATGCTTTGTCCACTGGGTTGAACGAGATGCTTCCTAGTGGGTGGAGCTTTGACTCTTTTGATGAGAACCCAGCTTTAGCTACTTTAAATCCCTCATTTGCTGCATTTTCAACACCATTAGACCATAGATTTGAATGTCCTTATGGCAGTGAAGCAGCATACCCTTTTGTTGACGGGTTCACAATGCCAGAGCTTGATTCATCATACACCAGGAATAATGACTCAGCACCACTTTTGCCACAAGAGGATAACCCATCAATGGAGGATGAAGAGTTTGGCTTTCTAGGCAGTAACAAGCAGAGTTTGGAACAAATAAGAAATAGCTGCAAAGTTGAGGAACAAGCTACAGAGATTCCAGTCTTCAACATGGGCATGTGTGGAGAGAAGAAACCAAAATCCAAAAAACTTGAAGGGCAGCCCTCAAAGAATCTCATGGCAGAAAGAAGGAGAAGAAAGCGTCTGAATGACCGTCTTTCCATGCTAAGGTCAATAGTCCCTAAGATCAGCAAGATGGACAGGACCTCCATTCTTGGAGATACCATTGATTACATGAAAGAGCTTCTAGAAAGGATTGGTAAGTTGCAAGAAGAAGAAATGGAGGAGGGAACAAATCAGATAAACTTCCTGGGCATTTCTAAGGAGCTAAAGCCAAATGAAGTTATGTTTGATGTTGAGAGGAGAGAACAGGATACGAGGATCAGCATCTGCTGTGCCACAAAGCCGGGATTGTTGCTGTCAACAGTCAACACCTTAGAATCATTAGGCCTTGAGATTCACCAGTGTGTTATAAGCAGCTTCAATGATTTTTCAATGCAAGCATCTTGCTCAGAGGCAGCCGAGCAGAGAAATTTTATGAGCCCTGAAGAGATTAAGCAAGCACTATTCAGAAATGCAGGTTATGGTGGAAGATGTCTCTAG 978 0.4284 MELSQLGFLEELLAPRKDTWNALSTGLNEMLPSGWSFDSFDENPALATLNPSFAAFSTPLDHRFECPYGSEAAYPFVDGFTMPELDSSYTRNNDSAPLLPQEDNPSMEDEEFGFLGSNKQSLEQIRNSCKVEEQATEIPVFNMGMCGEKKPKSKKLEGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTSILGDTIDYMKELLERIGKLQEEEMEEGTNQINFLGISKELKPNEVMFDVERREQDTRISICCATKPGLLLSTVNTLESLGLEIHQCVISSFNDFSMQASCSEAAEQRNFMSPEEIKQALFRNAGYGGRCL 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3692g00022 325 Gene3D - 147 208 IPR036638 GO:0046983
Gabi3692g00022 325 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 161 218 IPR036638 GO:0046983
Gabi3692g00022 325 Pfam Helix-loop-helix DNA-binding domain 164 207 IPR011598 GO:0046983
Gabi3692g00022 325 CDD ACT_UUR-ACR-like 251 292 - -
Gabi3692g00022 325 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 94 319 - -
Gabi3692g00022 325 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 158 207 IPR011598 GO:0046983
Gabi3692g00022 325 SMART finulus 164 213 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3692g00022 Gabi-Chr3692 360543 361919 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3692g00022 149 325 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 68.539 1.75e-75 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gabi3692g00022 HLH 6.8e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3692g00022 - - gmx:100806571 583.563