Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3692g00019 ATGTCTCCGGCGGTGGTTGTTACGGAGGAGGAAGGGCGGAGCAAAGTCTCGTCGACTGTAGCATCTGCATCTTCACAATCCTTAGATTGTTATGTTGCTGGATTGAAAGAACGGAATTACTTAGGACTATCAGATTGCTCATCAGTGGACAGTTGTGCCTCTACTGTTGCCAGCTTGAGCGATGAGAAAAAGGGGAACTTGAATTTGAAGGCTACAGAGTTGAGGCTGGGTCTTCCTGGATCCCAATCGCCTGAAAGGGATACGGAACCTGATCTTTACTCTTTAAGCTCAACAAAGCTTGATGAGAAGCCACTTTTCCCTTTGCTTCCTACAAAAGATGGAATCTGCTCCTCGTCCCAGAAAGCTGTGGTTTCGGGCAACAAAAGGGGTTTTGCTGATACCATGGATGGGTTTTCTCAGGGGAAGTTTACTGGAAATACAGGGATAAACGTAATGGTATCGCCTAGACCTTCTGGAGCTCAGCTTACCACGATGAAAGAAATGCCGAGCAAGGTGTTACAAGAACGGCCTTGTGCAGCTAATGGTACTGGTCATAACCATACAGGTGCTTCTATCAGTGGCAGTGCACCGGCTTCTAAGGCACAGGTTGTTGGTTGGCCTCCTATAAGATCATTTAGGAAAAACTCCATGGCTACCACTTCAAAGAACAATGATGAAGTGGATGGAAAACCAGGTCCTGCCGCACTCTTTGTGAAGGTCAGCATGGATGGTGCTCCCTATCTAAGGAAGGTAGATCTAAGAAGTTACACAACATATCAGGAACTATCTTCTGCCCTTGAGAAAATGTTTAGCTGTTTTATCCTCGGTCAGTGTGGTTCCCACGGAACCCCAGGAAGAGAAATGTTGAGTGAGAGCAAGCTGAGGGACCTTCTGCATGGTTCAGAATATGTACTCACTTATGAAGATAAAGACGGGGACTGGATGCTGGTGGGGGATGTGCCATGGGAAATGTTCATTGACACTTGCAAAAGGCTAAAAATCATGAAGGGCTCTGATGCCATTGGCTTAGCTCCTAGGGCCATGGAGAAGTCCAAAAGCAGGTGTTAG 1068 0.4682 MSPAVVVTEEEGRSKVSSTVASASSQSLDCYVAGLKERNYLGLSDCSSVDSCASTVASLSDEKKGNLNLKATELRLGLPGSQSPERDTEPDLYSLSSTKLDEKPLFPLLPTKDGICSSSQKAVVSGNKRGFADTMDGFSQGKFTGNTGINVMVSPRPSGAQLTTMKEMPSKVLQERPCAANGTGHNHTGASISGSAPASKAQVVGWPPIRSFRKNSMATTSKNNDEVDGKPGPAALFVKVSMDGAPYLRKVDLRSYTTYQELSSALEKMFSCFILGQCGSHGTPGREMLSESKLRDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIDTCKRLKIMKGSDAIGLAPRAMEKSKSRC 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3692g00019 355 ProSiteProfiles PB1 domain profile. 235 339 IPR000270 GO:0005515
Gabi3692g00019 355 FunFam Auxin-responsive protein 230 347 - -
Gabi3692g00019 355 Gene3D - 232 348 - -
Gabi3692g00019 355 SUPERFAMILY CAD & PB1 domains 233 336 - -
Gabi3692g00019 355 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 67 342 IPR003311 GO:0005634|GO:0006355
Gabi3692g00019 355 Pfam AUX/IAA family 72 346 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3692g00019 Gabi-Chr3692 308321 313495 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3692g00019 239 345 B3 DNA Binding Superfamily AT4G23980 30.841 2.29e-08 53.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Gabi3692g00019 AUX_IAA 1.1e-90 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3692g00019 K14484 - gmx:547502 603.208