Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3692g00004 ATGAATCTGTGGACGGACGACAACTCCTCCGTGATGGAGGCCTTCATGTCCTCCTCCGATCTCTCCTCCATCTGGCCAACGCCGGCGGCCGCTTCGCAACCCGCCACCGTCTTCAACCAAGACACCCTCCAGCAACGCCTCCAGGCACTCATCGAGGGTGCCAGGGAGAGCTGGACCTACGCCATCTTCTGGCAATCCTCCTACGACTACTCCGGCTCCTCCCTCCTCGGCTGGGGCGACGGTTACTACAAAGGCGAAGAAGACAAAGGCAAAGCCAAGGCCAAGGCCAAAGCCACCACCATCGCCGAGCAAGACCACCGCAAGAAGGTCCTCCGCGAGCTCAATTCCCTCATCTCCGGCTCCTCCACAGCCTCCGACGAAGCCGTCGACGAGGAGGTCACCGACACCGAGTGGTTCTTCCTTGTCTCCATGACTCAGTCCTTCGTCAACGGCGGCGGGTTGCCGGGTCAGGCTTTCCTAAACTCCACCCCTGTTTGGGTCACCGGCGGCGACCGACTCTCGTTGTCGGCGTGCGAGAGGGCGAGACAGGGGCAGGTGTTTGGGTTGCAGACCCTGGTGTGCATACCGTCGGCGAATGGAGTGGTGGAGCTGGGGTCCACCGAGCTGATTTACCAGAACACGGATCTGATGAACAAGGTGAAAGTACTCTTCAATTTCAACAACAACAATAACCCTGACGTGGCTTCATCGTGGCCGTTGAATGCTAGCACCGCCGATCAAGGCGAGAACGACCCTTCCTCGCTCTGGCTCAACGATCCTGAGATCAGGGATTCCGTCAACACCGTAGCTGCCACTCCTTCAGTTTCAAATGGAAACAACCAGCATTCTCTGAAGCCCGAATCGGGTGAGATTCTGAGTTTCGGAGAGAGCAAGAGAAGCTCTTACGGCGCAAACGGAAATTCCCATTCCCATTTCTTCTCGGGTCAGTCTCAGTTCGTTGCTGCTGCTGCTGACACCACCACCACCACCACCAACAACAACAATAAGAGGAGGTCGCCGAATTCGAGGAGCAGCAACGACGACGGAATGCTATCCTTCACCTCCGGCGTGATTCTGCCGGCGTCGAATATGAAATCCTCAGCCGGCGGCGGCGGCGGAGGAGATTCGGACCATTCGGATCTGGAAGCTTCTGTGGTGAAGGAGGCTGATAGCAGCAGGGTTGCTAGGGTGGCGGATCCGGAAAAACGACCAAGAAAAAGAGGGCGAAAGCCGGCCAACGGAAGAGAAGAACCGTTGAATCACGTTGAGGCGGAGAGGCAGAGGAGAGAGAAGCTGAACCAGAGGTTCTATGCGCTTCGCGCGGTGGTTCCGAACGTGTCGAAGATGGACAAAGCATCGCTTCTGGGTGACGCGATATCTTACATCAATGAGCTGAAATCAAAGGTTCAGAACCTTGAATCAGATAAAGATGGAATTGAGAAGCAACTAGATGCAGTCCAGAAGGAACTCGAGAAAACCAGGGAAAACTCTCCCCCTCCTCCTAAACCTGATAAATCATCATCGTCATCAAATAACGTTTTGATTGATTTGGAGATTGACGTGAAGATTATTGGTTGGGATGCAATGATTAGGATCCAATGCAGCAAGAAGAACCATCCCGCGGCAAGGTTGATGGCGGCTTTGATGGAGTTAGACCTTGACGTGAACCATGCCAGCGTGTCAGTGGTGAATGATTTGATGATTCAACAGGCAACCGTTAAGATGGGAAGTCGTTTTTACACGCAGGAGCAGCTTCGGTCAGCACTGTCGTCCAAAGTTGGTGATGCCCAATAG 1794 0.5452 MNLWTDDNSSVMEAFMSSSDLSSIWPTPAAASQPATVFNQDTLQQRLQALIEGARESWTYAIFWQSSYDYSGSSLLGWGDGYYKGEEDKGKAKAKAKATTIAEQDHRKKVLRELNSLISGSSTASDEAVDEEVTDTEWFFLVSMTQSFVNGGGLPGQAFLNSTPVWVTGGDRLSLSACERARQGQVFGLQTLVCIPSANGVVELGSTELIYQNTDLMNKVKVLFNFNNNNNPDVASSWPLNASTADQGENDPSSLWLNDPEIRDSVNTVAATPSVSNGNNQHSLKPESGEILSFGESKRSSYGANGNSHSHFFSGQSQFVAAAADTTTTTTNNNNKRRSPNSRSSNDDGMLSFTSGVILPASNMKSSAGGGGGGDSDHSDLEASVVKEADSSRVARVADPEKRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAISYINELKSKVQNLESDKDGIEKQLDAVQKELEKTRENSPPPPKPDKSSSSSNNVLIDLEIDVKIIGWDAMIRIQCSKKNHPAARLMAALMELDLDVNHASVSVVNDLMIQQATVKMGSRFYTQEQLRSALSSKVGDAQ 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3692g00004 597 Coils Coil 462 496 - -
Gabi3692g00004 597 PANTHER MYC 12 592 IPR045084 GO:0003700|GO:0006355
Gabi3692g00004 597 MobiDBLite consensus disorder prediction 385 426 - -
Gabi3692g00004 597 Gene3D - 408 497 IPR036638 GO:0046983
Gabi3692g00004 597 MobiDBLite consensus disorder prediction 361 380 - -
Gabi3692g00004 597 FunFam Transcription factor bHLH13 409 483 - -
Gabi3692g00004 597 MobiDBLite consensus disorder prediction 237 259 - -
Gabi3692g00004 597 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 43 224 IPR025610 -
Gabi3692g00004 597 MobiDBLite consensus disorder prediction 490 511 - -
Gabi3692g00004 597 MobiDBLite consensus disorder prediction 237 254 - -
Gabi3692g00004 597 CDD bHLH_AtAIB_like 413 489 - -
Gabi3692g00004 597 MobiDBLite consensus disorder prediction 327 354 - -
Gabi3692g00004 597 SMART finulus 422 471 IPR011598 GO:0046983
Gabi3692g00004 597 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 419 484 IPR036638 GO:0046983
Gabi3692g00004 597 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 416 465 IPR011598 GO:0046983
Gabi3692g00004 597 Pfam Helix-loop-helix DNA-binding domain 420 465 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3692g00004 Gabi-Chr3692 56913 59372 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3692g00004 2 596 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G17880 57.285 0.0 636
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gabi3692g00004 bHLH-MYC_N 3.9e-55 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3692g00004 K13422 - gmx:100776289 726.472