Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3692g00003 ATGAATCTGTGGACGGACGACAACTCCTCCGTGATGGAGGCCTTCATGTCCTCCTCCGATCTCTCCTCCATCTGGCCAACGCCGGCGGCCGCTTCGCAACCCGCCACCGTCTTCAACCAAGACACCCTCCAGCAACGCCTCCAGGCACTCATCGAGGGTGCCAGGGAGAGCTGGACCTACGCCATCTTCTGGCAATCCTCCTACGACTACTCCGGCTCCTCCCTCCTCGGCTGGGGCGACGGTTACTACAAAGGCGAAGAAGACAAAGGCAAAGCCAAGGCCAAGGCCAAAGCCACCACCATCGCCGAGCAAGACCACCGCAAGAAGGTCCTCCGCGAGCTCAATTCCCTCATCTCCGGCTCCTCCACAGCCTCCGACGAAGCCGTCGACGAGGAGGTCACCGACACCGAGTGGTTCTTCCTTGTCTCCATGACTCAGTCCTTCGTCAACGGCGGCGGGTTGCCGGGTCAGGCTTTCCTAAACTCCACCCCTGTTTGGGTCACCGGCGGCGACCGACTCTCGTTGTCGGCGTGCGAGAGGGCGAGACAGGGGCAGGTGTTTGGGTTGCAGACCCTGGTGTGCATACCGTCGGCGAATGGAGTGGTGGAGCTGGGGTCCACCGAGCTGATTTACCAGAACACGGATCTGATGAACAAGGTGAAAGTACTCTTCAATTTCAACAACAACAATAACCCTGACGTGGCTTCATCGTGGCCGTTGAATGCTAGCACCGCCGATCAAGGCGAGAACGACCCTTCCTCGCTCTGGCTCAACGATCCTGAGATCAGGGATTCCGTCAACACCGTAGCTGCCACTCCTTCAGTTTCAGTTCCAAACCATAATAACAATCAGGGAATTGCGAAAACTATGCAGTTCGAAACCCCAGGTTCAAGTACCTTAACAGAAACCCCTAGTGCGATTCATCCCGAATCGGGTGAGATTCTGAGTTTCGGAGAGAGCAAGAGAAGCTCTTACGGCGCAAACGGAAATTCCCATTCCCATTTCTTCTCGGGTCAGTCTCAGTTCGTTGCTGCTGCTGCTGACACCACCACCACCACCACCAACAACAACAATAAGAGGAGGTCGCCGAATTCGAGGAGCAGCAACGACGACGGAATGCTATCCTTCACCTCCGGCGTGATTCTGCCGGCGTCGAATATGAAATCCTCAGCCGGCGGCGGCGGCGGAGGAGATTCGGACCATTCGGATCTGGAAGCTTCTGTGGTGAAGGAGGCTGATAGCAGCAGGGTTGCTAGGGTGGCGGATCCGGAAAAACGACCAAGAAAAAGAGGGCGAAAGCCGGCCAACGGAAGAGAAGAACCGTTGAATCACGTTGAGGCGGAGAGGCAGAGGAGAGAGAAGCTGAACCAGAGGTTCTATGCGCTTCGCGCGGTGGTTCCGAACGTGTCGAAGATGGACAAAGCATCGCTTCTGGGTGACGCGATATCTTACATCAATGAGCTGAAATCAAAGGTTCAGAACCTTGAATCAGATAAAGATGGAATTGAGAAGCAACTAGATGCAGTCCAGAAGGAACTCGAGAAAACCAGGGAAAACTCTCCCCCTCCTCCTAAACCTGATAAATCATCATCGTCATCAAATAACGTTTTGATTGATTTGGAGATTGACGTGAAGATTATTGGTTGGGATGCAATGATTAGGATCCAATGCAGCAAGAAGAACCATCCCGCGGCAAGGTTGATGGCGGCTTTGATGGAGTTAGACCTTGACGTGAACCATGCCAGCGTGTCAGTGGTGAATGATTTGATGATTCAACAGGCAACCGTTAAGATGGGAAGTCGTTTTTACACGCAGGAGCAGCTTCGGTCAGCACTGTCGTCCAAAGTTGGTGATGCCCAATAG 1863 0.5405 MNLWTDDNSSVMEAFMSSSDLSSIWPTPAAASQPATVFNQDTLQQRLQALIEGARESWTYAIFWQSSYDYSGSSLLGWGDGYYKGEEDKGKAKAKAKATTIAEQDHRKKVLRELNSLISGSSTASDEAVDEEVTDTEWFFLVSMTQSFVNGGGLPGQAFLNSTPVWVTGGDRLSLSACERARQGQVFGLQTLVCIPSANGVVELGSTELIYQNTDLMNKVKVLFNFNNNNNPDVASSWPLNASTADQGENDPSSLWLNDPEIRDSVNTVAATPSVSVPNHNNNQGIAKTMQFETPGSSTLTETPSAIHPESGEILSFGESKRSSYGANGNSHSHFFSGQSQFVAAAADTTTTTTNNNNKRRSPNSRSSNDDGMLSFTSGVILPASNMKSSAGGGGGGDSDHSDLEASVVKEADSSRVARVADPEKRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAISYINELKSKVQNLESDKDGIEKQLDAVQKELEKTRENSPPPPKPDKSSSSSNNVLIDLEIDVKIIGWDAMIRIQCSKKNHPAARLMAALMELDLDVNHASVSVVNDLMIQQATVKMGSRFYTQEQLRSALSSKVGDAQ 620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3692g00003 620 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 43 224 IPR025610 -
Gabi3692g00003 620 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 439 488 IPR011598 GO:0046983
Gabi3692g00003 620 CDD bHLH_AtAIB_like 436 512 - -
Gabi3692g00003 620 Coils Coil 485 519 - -
Gabi3692g00003 620 SMART finulus 445 494 IPR011598 GO:0046983
Gabi3692g00003 620 MobiDBLite consensus disorder prediction 384 403 - -
Gabi3692g00003 620 MobiDBLite consensus disorder prediction 237 256 - -
Gabi3692g00003 620 MobiDBLite consensus disorder prediction 408 449 - -
Gabi3692g00003 620 FunFam Transcription factor bHLH13 432 506 - -
Gabi3692g00003 620 Gene3D - 431 520 IPR036638 GO:0046983
Gabi3692g00003 620 MobiDBLite consensus disorder prediction 350 377 - -
Gabi3692g00003 620 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 442 507 IPR036638 GO:0046983
Gabi3692g00003 620 MobiDBLite consensus disorder prediction 237 254 - -
Gabi3692g00003 620 Pfam Helix-loop-helix DNA-binding domain 443 488 IPR011598 GO:0046983
Gabi3692g00003 620 PANTHER MYC 12 615 IPR045084 GO:0003700|GO:0006355
Gabi3692g00003 620 MobiDBLite consensus disorder prediction 513 534 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3692g00003 Gabi-Chr3692 56913 59372 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3692g00003 1 617 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G32640 55.341 0.0 648
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gabi3692g00003 bHLH-MYC_N 4.2e-55 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3692g00003 K13422 - gmx:100776289 818.92