Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3692g00002 ATGAATCTGTGGACGGACGACAACTCCTCCGTGATGGAGGCCTTCATGTCCTCCTCCGATCTCTCCTCCATCTGGCCAACGCCGGCGGCCGCTTCGCAACCCGCCACCGTCTTCAACCAAGACACCCTCCAGCAACGCCTCCAGGCACTCATCGAGGGTGCCAGGGAGAGCTGGACCTACGCCATCTTCTGGCAATCCTCCTACGACTACTCCGGCTCCTCCCTCCTCGGCTGGGGCGACGGTTACTACAAAGGCGAAGAAGACAAAGGCAAAGCCAAGGCCAAGGCCAAAGCCACCACCATCGCCGAGCAAGACCACCGCAAGAAGGTCCTCCGCGAGCTCAATTCCCTCATCTCCGGCTCCTCCACAGCCTCCGACGAAGCCGTCGACGAGGAGGTCACCGACACCGAGTGGTTCTTCCTTGTCTCCATGACTCAGTCCTTCGTCAACGGCGGCGGGTTGCCGGGTCAGGCTTTCCTAAACTCCACCCCTGTTTGGGTCACCGGCGGCGACCGACTCTCGTTGTCGGCGTGCGAGAGGGCGAGACAGGGGCAGGTGTTTGGGTTGCAGACCCTGGTGTGCATACCGTCGGCGAATGGAGTGGTGGAGCTGGGGTCCACCGAGCTGATTTACCAGAACACGGATCTGATGAACAAGGTGAAAGTACTCTTCAATTTCAACAACAACAATAACCCTGACGTGGCTTCATCGTGGCCGTTGAATGCTAGCACCGCCGATCAAGGCGAGAACGACCCTTCCTCGCTCTGGCTCAACGATCCTGAGATCAGGGATTCCGTCAACACCGTAGCTGCCACTCCTTCAGTTTCAGTTCCAAACCATAATAACAATCAGGGAATTGCGAAAACTATGCAGTTCGAAACCCCAGGTTCAAGTACCTTAACAGAAACCCCTAGTGCGATTCATGTCCCGAACACTGTCACTCATCATCAGAACCAGCCATCGCAGAACCAGAGCTTCTTCACCAGGGAATTGCAGTTTTCCGAATACGGCTTCGAAGCGAAGAATGGAAACAACCAGCATTCTCTGAAGCCCGAATCGGGTGAGATTCTGAGTTTCGGAGAGAGCAAGAGAAGCTCTTACGGCGCAAACGGAAATTCCCATTCCCATTTCTTCTCGGGTCAGTCTCAGTTCGTTGCTGCTGCTGCTGACACCACCACCACCACCACCAACAACAACAATAAGAGGAGGTCGCCGAATTCGAGGAGCAGCAACGACGACGGAATGCTATCCTTCACCTCCGGCGTGATTCTGCCGGCGTCGAATATGAAATCCTCAGCCGGCGGCGGCGGCGGAGGAGATTCGGACCATTCGGATCTGGAAGCTTCTGTGGTGAAGGAGGCTGATAGCAGCAGGGTTGCTAGGGTGGCGGATCCGGAAAAACGACCAAGAAAAAGAGGGCGAAAGCCGGCCAACGGAAGAGAAGAACCGTTGAATCACGTTGAGGCGGAGAGGCAGAGGAGAGAGAAGCTGAACCAGAGGTTCTATGCGCTTCGCGCGGTGGTTCCGAACGTGTCGAAGATGGACAAAGCATCGCTTCTGGGTGACGCGATATCTTACATCAATGAGCTGAAATCAAAGGTTCAGAACCTTGAATCAGATAAAGATGGAATTGAGAAGCAACTAGATGCAGTCCAGAAGGAACTCGAGAAAACCAGGGAAAACTCTCCCCCTCCTCCTAAACCTGATAAATCATCATCGTCATCAAATAACGTTTTGATTGATTTGGAGATTGACGTGAAGATTATTGGTTGGGATGCAATGATTAGGATCCAATGCAGCAAGAAGAACCATCCCGCGGCAAGGTTGATGGCGGCTTTGATGGAGTTAGACCTTGACGTGAACCATGCCAGCGTGTCAGTGGTGAATGATTTGATGATTCAACAGGCAACCGTTAAGATGGGAAGTCGTTTTTACACGCAGGAGCAGCTTCGGTCAGCACTGTCGTCCAAAGTTGGTGATGCCCAATAG 1989 0.5375 MNLWTDDNSSVMEAFMSSSDLSSIWPTPAAASQPATVFNQDTLQQRLQALIEGARESWTYAIFWQSSYDYSGSSLLGWGDGYYKGEEDKGKAKAKAKATTIAEQDHRKKVLRELNSLISGSSTASDEAVDEEVTDTEWFFLVSMTQSFVNGGGLPGQAFLNSTPVWVTGGDRLSLSACERARQGQVFGLQTLVCIPSANGVVELGSTELIYQNTDLMNKVKVLFNFNNNNNPDVASSWPLNASTADQGENDPSSLWLNDPEIRDSVNTVAATPSVSVPNHNNNQGIAKTMQFETPGSSTLTETPSAIHVPNTVTHHQNQPSQNQSFFTRELQFSEYGFEAKNGNNQHSLKPESGEILSFGESKRSSYGANGNSHSHFFSGQSQFVAAAADTTTTTTNNNNKRRSPNSRSSNDDGMLSFTSGVILPASNMKSSAGGGGGGDSDHSDLEASVVKEADSSRVARVADPEKRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAISYINELKSKVQNLESDKDGIEKQLDAVQKELEKTRENSPPPPKPDKSSSSSNNVLIDLEIDVKIIGWDAMIRIQCSKKNHPAARLMAALMELDLDVNHASVSVVNDLMIQQATVKMGSRFYTQEQLRSALSSKVGDAQ 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3692g00002 662 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 43 224 IPR025610 -
Gabi3692g00002 662 MobiDBLite consensus disorder prediction 392 419 - -
Gabi3692g00002 662 Coils Coil 527 561 - -
Gabi3692g00002 662 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 484 549 IPR036638 GO:0046983
Gabi3692g00002 662 MobiDBLite consensus disorder prediction 555 576 - -
Gabi3692g00002 662 FunFam Transcription factor bHLH13 474 548 - -
Gabi3692g00002 662 CDD bHLH_AtAIB_like 478 554 - -
Gabi3692g00002 662 SMART finulus 487 536 IPR011598 GO:0046983
Gabi3692g00002 662 Pfam Helix-loop-helix DNA-binding domain 485 530 IPR011598 GO:0046983
Gabi3692g00002 662 PANTHER MYC 12 657 IPR045084 GO:0003700|GO:0006355
Gabi3692g00002 662 MobiDBLite consensus disorder prediction 450 491 - -
Gabi3692g00002 662 MobiDBLite consensus disorder prediction 426 445 - -
Gabi3692g00002 662 Gene3D - 473 562 IPR036638 GO:0046983
Gabi3692g00002 662 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 481 530 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3692g00002 Gabi-Chr3692 56913 59372 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3692g00002 1 659 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G32640 55.930 0.0 668
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gabi3692g00002 bHLH-MYC_N 4.7e-55 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3692g00002 K13422 - gmx:100776289 869.766