Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3692g00001 ATGGCGTCCGAAGCCTTCACCGACAAGAACATCGTCTTTCGAAAACTCAAGGCAAAGTCCGAAAACAAGATGTGTTTCGATTGTAATGCAAAGAACCCAACTTGGGCCTCCGTCACCTATGGGATCTTCCTCTGCATCGATTGCTCAGCTGTTCATCGCAGCCTCGGCGTGCACATCAGTTTTGTGAGATCTACAAATTTAGACTCATGGAGTCCTGAGCAATTAAGAATGATGAGCTTTGGAGGAAACAATCGTGCACAGGTTTTCTTTAAGCAACATGGTTGGACTGATGGTGGTAAAATAGAGGCCAAGTATACATCAAGAGCTGCAGAGTTATATAGACAAATTCTTTCTAAGGAAGTAGCTAAAAGTATGGCTGAGGAGGCAGGTTCACCATCATCACCTGTTGCTTCTCAGTCTGCACAAGCAGGCAATGGACTTCCTGAAGTAATGACCAATGAATTACCAAAAGGAAATACTCTGGGGAAGCCTGAAATGCCTGAGAGCACTTCTTCACCTAGAGCTTCACATACAATATTTTCCAGTACTGTCAAGAAACCTATTGGTGCTAAAAAAATGGGGAAGACTGGTGGACTTGGTGCCCGGAAACTTACTAAAAAGCCAAGTGAGTCTCTCTATGAGCAGAAGGCCGAAGAACCACCTGCTCCAGTTTCTTCCTCATCAAACAACAATTTGCTTACTGGGCCAGCACTGACATCCCGGTTTGAGTATGTGGAAAATGTCCAATCATCTGAGTTAAATTCTGGAGTTGGGGGCACACATTTACTTAGTCATGTGTCTGTACCAAAGTCATCAAGCTTCTTTGCAGACTTCGGAATGGATAGCAGTTTTCCAAAGAAATCTGGGTCTAATTCCTCAAAAGTGCAAATTCAGGAGTCTGATGAAGCAAGAAAGAAGTTCTCAAATGCTAAATCTATTTCTTCATCCCAATTTTTCGGAGATCAAAACAAAGCTGCAGATTTGGCTGCTCAGGCTACTTTGTCAAAGTTTTCAGGTTCATCTGCCATCTCCAGTGCCGATTTTTTTGGTGACTCAACAGATAACTCCTCCATTGATCTTGCTGCTAGTGACCTGCTTAATCGACTGTCTTTCCAGGCACAACAAGATATCTCATCCCTTAAAAATATTGCCGGAGAGACTGGGAAGAAGCTCAGTTCCTTGGCGTCCACTTTGATGACAGATCTTCAGGACCGAATACTCTAA 1224 0.4346 MASEAFTDKNIVFRKLKAKSENKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSPEQLRMMSFGGNNRAQVFFKQHGWTDGGKIEAKYTSRAAELYRQILSKEVAKSMAEEAGSPSSPVASQSAQAGNGLPEVMTNELPKGNTLGKPEMPESTSSPRASHTIFSSTVKKPIGAKKMGKTGGLGARKLTKKPSESLYEQKAEEPPAPVSSSSNNNLLTGPALTSRFEYVENVQSSELNSGVGGTHLLSHVSVPKSSSFFADFGMDSSFPKKSGSNSSKVQIQESDEARKKFSNAKSISSSQFFGDQNKAADLAAQATLSKFSGSSAISSADFFGDSTDNSSIDLAASDLLNRLSFQAQQDISSLKNIAGETGKKLSSLASTLMTDLQDRIL 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3692g00001 407 CDD ArfGap_ArfGap2_3_like 8 123 - -
Gabi3692g00001 407 ProSiteProfiles ARF GTPase-activating proteins domain profile. 10 128 IPR001164 GO:0005096
Gabi3692g00001 407 MobiDBLite consensus disorder prediction 164 183 - -
Gabi3692g00001 407 SUPERFAMILY ArfGap/RecO-like zinc finger 12 125 IPR037278 -
Gabi3692g00001 407 PRINTS HIV Rev interacting protein signature 62 83 IPR001164 GO:0005096
Gabi3692g00001 407 PRINTS HIV Rev interacting protein signature 22 41 IPR001164 GO:0005096
Gabi3692g00001 407 PRINTS HIV Rev interacting protein signature 41 58 IPR001164 GO:0005096
Gabi3692g00001 407 SMART arf_gap_3 10 126 IPR001164 GO:0005096
Gabi3692g00001 407 MobiDBLite consensus disorder prediction 124 231 - -
Gabi3692g00001 407 FunFam ADP-ribosylation factor GTPase-activating protein AGD10 1 137 - -
Gabi3692g00001 407 PANTHER ADP-RIBOSYLATION FACTOR GTPASE ACTIVATING PROTEIN 3, ISOFORM H-RELATED 5 407 - -
Gabi3692g00001 407 Pfam Putative GTPase activating protein for Arf 12 106 IPR001164 GO:0005096
Gabi3692g00001 407 Gene3D Arf GTPase activating protein 1 140 IPR038508 -
Gabi3692g00001 407 MobiDBLite consensus disorder prediction 131 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3692g00001 Gabi-Chr3692 6761 12565 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3692g00001 13 91 C2H2 Transcription Factor Family AT4G21160 46.250 9.31e-20 87.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3692g00001 K12493 K11855 gmx:100785169 647.891