Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3690g00003 ATGTCCAGGACTCTTGCAGCAATATTTGGAGGAGCTGCAGGAGCCGTGGCATTGGTCGGGATGATTATAGTACTTATACGGTTCTGTCTGTCTCACAAAAGGAGTGTTTCAAGGACTTCAGAGACAGGATCCTCTGATCCTTCACAAGTGGGAAGAATAGAATTGCAATTACGAGACACTAGGCGTTTTGAGATGGAAGAACTATCTCTGGCCACAAAAAATTTCACAGAGAAAAATTTAATGGGAGAAGGGAAATTTGGGGAAGTTTACAAGGGTTTACTTCAAGATGGGGTGCTTGTAGCCATCAAAAAGCGCCGTGCACTCCCGAGTCATGAATTTGTTGATGAGGTACGGTATCTCTCATCTATTCAGCATCGGAATCTCGTAACTCTTTTAGGCTATTGTCAGGAAAACAATTTTCAGTTTCTTATATATGAATATGTGCCTAATGGGAGCGTCTCCAGTCACTTGTATGGCGCTGGTCAGCAATCGCATGAGAAGCTAGAATTCAAGCATAGACTTTCAATAGCTCTGGGTGCAGCTAAAGGTTTGGCTCATCTTCACTCTTTGAGCCCCCGTTTGGTGCATAAGGATTTCAAAACAGCCAATGTTCTTGTGGATGAAAACTTCATTGCTAAGGTTGCTGATGCAGGACTTCGTAACTTTTTCGGAAGAGATGAGATTGCAGGGCCATCTTCTCAAGTGGCATCAGATGAGATATTCCTTGCTCCTGAAGTGAGAGAGTTCAGACAATTTTCTGAAAAGAGTGATGTATACAGCTTTGGCGTATTTTTGCTGGAATTGTTAAGTGGAAAGGAAGCAGCAGAATCACCATCTTCAGACTCTTATCAGAATCTAGTTGAATGGGTGCAAAGTAATCAAGACCATGGCAATATCTTTAACATGGTTGATAAGAGATTGGGGAGTAGTTTTACTGGTGAAGGCATGGAAGAGTTCATCATGCTGATAGCTAAATGTTTAGATCCATCAAGTGAGAGGCGACCTTCCATGAACTATGTGGTAACAGAACTAGATCGAATACTTGAAAAGGAAATGAATTTGACTACATTCATGGGTGAAGGAACTCCAACTGTGACCCTTGGAAGTCAGTTATTCAAAACAACAACATAG 1131 0.4182 MSRTLAAIFGGAAGAVALVGMIIVLIRFCLSHKRSVSRTSETGSSDPSQVGRIELQLRDTRRFEMEELSLATKNFTEKNLMGEGKFGEVYKGLLQDGVLVAIKKRRALPSHEFVDEVRYLSSIQHRNLVTLLGYCQENNFQFLIYEYVPNGSVSSHLYGAGQQSHEKLEFKHRLSIALGAAKGLAHLHSLSPRLVHKDFKTANVLVDENFIAKVADAGLRNFFGRDEIAGPSSQVASDEIFLAPEVREFRQFSEKSDVYSFGVFLLELLSGKEAAESPSSDSYQNLVEWVQSNQDHGNIFNMVDKRLGSSFTGEGMEEFIMLIAKCLDPSSERRPSMNYVVTELDRILEKEMNLTTFMGEGTPTVTLGSQLFKTTT 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3690g00003 376 ProSitePatterns Serine/Threonine protein kinases active-site signature. 194 206 IPR008271 GO:0004672|GO:0006468
Gabi3690g00003 376 Gene3D Phosphorylase Kinase; domain 1 35 147 - -
Gabi3690g00003 376 FunFam Protein kinase superfamily protein 41 147 - -
Gabi3690g00003 376 FunFam Protein kinase superfamily protein 148 361 - -
Gabi3690g00003 376 ProSiteProfiles Protein kinase domain profile. 75 348 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3690g00003 376 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 15 353 IPR047117 -
Gabi3690g00003 376 SUPERFAMILY Protein kinase-like (PK-like) 52 344 IPR011009 -
Gabi3690g00003 376 Pfam Protein tyrosine and serine/threonine kinase 78 344 IPR001245 GO:0004672|GO:0006468
Gabi3690g00003 376 Gene3D Transferase(Phosphotransferase) domain 1 148 360 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3690g00003 Gabi-Chr3690 31474 35724 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3690g00003 5 344 Receptor kinase-like Gene Family AT5G48740 36.782 4.81e-61 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXa Gabi3690g00003 PK_Tyr_Ser-Thr 1.7e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3690g00003 - - gmx:100305436 587.8