Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3686g00003 ATGGCAATTTCATCTTTTGCACAGGAACAAAAGCAACCGAGAAAATGCAAAAAAGCAAGGGTGCATCCAAGAAAATGCAAGAATAGGCTGAGGGATTCATCAGATGATGACGATGATGATGATGATGAGTGGACTCCGACAAAGACCCTCCAACCTTATGCAGTGCCGGAACAAAAGCAACCGAGAAATTGCAAGAAAGCAAGGGTGCATCCAAGAAAGTGCAAGAAAAGGCCGAGGGATTCATCAGATGATGACGATGATGATGATGAGTGGACTCCGACAAAGACCCTCCAACCTTATGCAGTGCCGGAACAAAAGCAACCAAGAAAATGCAAGAAAGCAAGGGTGCATCCTAGAAAATGCAAGAAAAGAAAGCAAGTGTCAGATGATGAATACTCTCAACCCATGAGTTTCGTAGGTGGTAAAAGAGCTGGTAAGGTCCTGCGATCGAGCGAAAGGGTAAGGAATGGGGATGAGGCACAAAGTTCTGGGAATCAACGAACAATCATCTCTTGGCTGATAGACAACAATGTGGTGCATTCAGAATCCAAGGTATTCTGTTACAGTAGAAATAATGTGGTGAAAAATGGGAGGCTATTGCATTGTGGAAGAATAGCTTGTGATTGTTGTGGTTCGGTTTTCTCCATCGCTAAATTTGAGGCTCATGCTGATTGTACAAAGCACAGACCATCTGCCAGTATCTTCTTGGAAGATGGAAGGTCACTGTTAGATTGCAAAAGAGAAGCACTGAGTTCGCAACAAAAAAAGAATGATGTTCTGATGCAGAGCGAAAGTGGTTATGAAGACAGGAACAACAACATTTGTTCCATTTGTAGTTATGGGGGTAATCTAATGCTATGTGACCGATGTCCATCCTCATTCCACCTTAGTTGTCTTGGTCTTGAGAAAGTTCCTGATGGTGATTGGTTCTGCCCCCCATGCTGCTGCAAAATCTGCAACCGACCTTCATGTAGAGAAGATTGTGCAGATAATTATCCGGATAACTGTTTTCTCTTCTGTTATCAATGCGAGAGCAAATTTCACCTTGGATGCGCAAATAATAATAGCTTTTGCAGTGTTGATTGTGGGGATATATTTTCCAGTCTACAGAAAATGATAGGAAAACCAATTCCAGTGGGTGAGGATAACCTAACTTGGACATTGTTGAAGACCGTGAAAAGTGATAACTGTTGCGAGGATCTTGAGAGCTTAAGTCAAATTGAAAGCAAGCTGAGTATGGCTCTTAGTGTATTCCACGAGTGTTTTGATCCAATTATTGATGCTCTCACCGGAAGAAATATTATATCAGATGTTATTTTTAGTAGAAGTTCAGAGCATAAGCGTTTGAACTTTCGTGGGTTCTACACTGTGATTATGGAGAGTAATGATCATGTGGTTTCTGCTGCAACCATAAGGATTTATGGTCAAAAGGTTGCAGAGATACCTTTTGTGGCCACTAGGAAGCAGTTTCGAAGACAAGGAATGTGTAGCATCTTGATGAATGAGCTTGAGAAGCAATTGTGTCACTTAGGAATTGAGAGGATGGTTTTGCCTTCCACTGATAGTGCGATAGAGACTTGGACAAACTCATTTGGCTTTGCAAGGATGACAGATTCTGACAAGTCTCAATTGCTTGATTATGCTTTTCTAGACTTCCATGACACCACTATGTGCCACAAACCATTGATGAAAACTTCAATGTAA 1704 0.4161 MAISSFAQEQKQPRKCKKARVHPRKCKNRLRDSSDDDDDDDDEWTPTKTLQPYAVPEQKQPRNCKKARVHPRKCKKRPRDSSDDDDDDDEWTPTKTLQPYAVPEQKQPRKCKKARVHPRKCKKRKQVSDDEYSQPMSFVGGKRAGKVLRSSERVRNGDEAQSSGNQRTIISWLIDNNVVHSESKVFCYSRNNVVKNGRLLHCGRIACDCCGSVFSIAKFEAHADCTKHRPSASIFLEDGRSLLDCKREALSSQQKKNDVLMQSESGYEDRNNNICSICSYGGNLMLCDRCPSSFHLSCLGLEKVPDGDWFCPPCCCKICNRPSCREDCADNYPDNCFLFCYQCESKFHLGCANNNSFCSVDCGDIFSSLQKMIGKPIPVGEDNLTWTLLKTVKSDNCCEDLESLSQIESKLSMALSVFHECFDPIIDALTGRNIISDVIFSRSSEHKRLNFRGFYTVIMESNDHVVSAATIRIYGQKVAEIPFVATRKQFRRQGMCSILMNELEKQLCHLGIERMVLPSTDSAIETWTNSFGFARMTDSDKSQLLDYAFLDFHDTTMCHKPLMKTSM 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3686g00003 567 MobiDBLite consensus disorder prediction 1 138 - -
Gabi3686g00003 567 Pfam Acetyltransferase (GNAT) family 443 533 IPR000182 GO:0016747
Gabi3686g00003 567 ProSiteProfiles Zinc finger PHD-type profile. 272 317 IPR019787 -
Gabi3686g00003 567 PANTHER PHD FINGER PROTEIN 12 43 565 IPR042163 GO:0003714|GO:0045892
Gabi3686g00003 567 CDD NAT_SF 457 517 - -
Gabi3686g00003 567 SUPERFAMILY FYVE/PHD zinc finger 263 324 IPR011011 -
Gabi3686g00003 567 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 260 337 IPR013083 -
Gabi3686g00003 567 Gene3D - 395 564 - -
Gabi3686g00003 567 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 399 556 IPR000182 GO:0016747
Gabi3686g00003 567 Pfam PHD-finger 274 316 IPR019787 -
Gabi3686g00003 567 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 441 534 IPR016181 -
Gabi3686g00003 567 SMART PHD_3 274 315 IPR001965 -
Gabi3686g00003 567 Pfam Tify domain binding domain 205 249 IPR032308 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3686g00003 Gabi-Chr3686 50275 52716 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3686g00003 139 510 PHD Transcription Factor Family AT5G58610 42.711 2.54e-92 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Gabi3686g00003 Acetyltransf_1 2.5e-08 CL0257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3686g00003 - - aprc:113866262 528.094