Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3686g00002 ATGGCAATTTCATCTTTTGCACAGGAACAAAAGCAACCGAGAAAATGCAAAAAAGCAAGGGTGCATCCAAGAAAATGCAAGAATAGGCTGAGGGATTCATCAGATGATGACGATGATGATGATGATGAGTGGACTCCGACAAAGACCCTCCAACCTTATGCAGTGCCGGAACAAAAGCAACCAAGAAAATGCAAGAAAGCAAGGGTGCATCCTAGAAAATGCAAGAAAAGAAAGCAAGTGTCAGATGATGAATACTCTCAACCCATGAGTTTCGTAGGTGGTAAAAGAGCTGGTAAGGTCCTGCGATCGAGCGAAAGGGTAAGGAATGGGGATGAGGCACAAAGTTCTGGGAATCAACGAACAATCATCTCTTGGCTGATAGACAACAATGTGGTGCATTCAGAATCCAAGGTATTCTGTTACAGTAGAAATAATGTGGTGAAAAATGGGAGGCTATTGCATTGTGGAAGAATAGCTTGTGATTGTTGTGGTTCGGTTTTCTCCATCGCTAAATTTGAGGCTCATGCTGATTGTACAAAGCACAGACCATCTGCCAGTATCTTCTTGGAAGATGGAAGGTCACTGTTAGATTGCAAAAGAGAAGCACTGAGTTCGCAACAAAAAAAGAATGATGTTCTGATGCAGAGCGAAAGTGGTTATGAAGACAGGAACAACAACATTTGTTCCATTTGTAGTTATGGGGGTAATCTAATGCTATGTGACCGATGTCCATCCTCATTCCACCTTAGTTGTCTTGGTCTTGAGAAAGTTCCTGATGGTGATTGGTTCTGCCCCCCATGCTGCTGCAAAATCTGCAACCGACCTTCATGTAGAGAAGATTGTGCAGATAATTATCCGGATAACTGTTTTCTCTTCTGTTATCAATGCGAGAGCAAATTTCACCTTGGATGCGCAAATAATAATAGCTTTTGCAGTGTTGATTGTGGGGATATATTTTCCAGTCTACAGAAAATGATAGGAAAACCAATTCCAGTGGGTGAGGATAACCTAACTTGGACATTGTTGAAGACCGTGAAAAGTGATAACTGTTGCGAGGATCTTGAGAGCTTAAGTCAAATTGAAAGCAAGCTGAGTATGGCTCTTAGTGTATTCCACGAGTGTTTTGATCCAATTATTGATGCTCTCACCGGAAGAAATATTATATCAGATGTTATTTTTAGTAGAAGTTCAGAGCATAAGCGTTTGAACTTTCGTGGGTTCTACACTGTGATTATGGAGAGTAATGATCATGTGGTTTCTGCTGCAACCATAAGGATTTATGGTCAAAAGGTTGCAGAGATACCTTTTGTGGCCACTAGGAAGCAGTTTCGAAGACAAGGAATGTGTAGCATCTTGATGAATGAGCTTGAGAAGCAATTGTGTCACTTAGGAATTGAGAGGATGGTTTTGCCTTCCACTGATAGTGCGATAGAGACTTGGACAAACTCATTTGGCTTTGCAAGGATGACAGATTCTGACAAGTCTCAATTGCTTGATTATGCTTTTCTAGACTTCCATGACACCACTATGTGCCACAAACCATTGATGAAAACTTCAATGTAA 1563 0.4107 MAISSFAQEQKQPRKCKKARVHPRKCKNRLRDSSDDDDDDDDEWTPTKTLQPYAVPEQKQPRKCKKARVHPRKCKKRKQVSDDEYSQPMSFVGGKRAGKVLRSSERVRNGDEAQSSGNQRTIISWLIDNNVVHSESKVFCYSRNNVVKNGRLLHCGRIACDCCGSVFSIAKFEAHADCTKHRPSASIFLEDGRSLLDCKREALSSQQKKNDVLMQSESGYEDRNNNICSICSYGGNLMLCDRCPSSFHLSCLGLEKVPDGDWFCPPCCCKICNRPSCREDCADNYPDNCFLFCYQCESKFHLGCANNNSFCSVDCGDIFSSLQKMIGKPIPVGEDNLTWTLLKTVKSDNCCEDLESLSQIESKLSMALSVFHECFDPIIDALTGRNIISDVIFSRSSEHKRLNFRGFYTVIMESNDHVVSAATIRIYGQKVAEIPFVATRKQFRRQGMCSILMNELEKQLCHLGIERMVLPSTDSAIETWTNSFGFARMTDSDKSQLLDYAFLDFHDTTMCHKPLMKTSM 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3686g00002 520 PANTHER PHD FINGER PROTEIN 12 31 518 IPR042163 GO:0003714|GO:0045892
Gabi3686g00002 520 Pfam PHD-finger 227 269 IPR019787 -
Gabi3686g00002 520 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 394 487 IPR016181 -
Gabi3686g00002 520 SMART PHD_3 227 268 IPR001965 -
Gabi3686g00002 520 Gene3D - 348 517 - -
Gabi3686g00002 520 Pfam Acetyltransferase (GNAT) family 396 486 IPR000182 GO:0016747
Gabi3686g00002 520 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 213 290 IPR013083 -
Gabi3686g00002 520 CDD NAT_SF 410 470 - -
Gabi3686g00002 520 Pfam Tify domain binding domain 158 202 IPR032308 -
Gabi3686g00002 520 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 352 509 IPR000182 GO:0016747
Gabi3686g00002 520 SUPERFAMILY FYVE/PHD zinc finger 216 277 IPR011011 -
Gabi3686g00002 520 MobiDBLite consensus disorder prediction 1 89 - -
Gabi3686g00002 520 ProSiteProfiles Zinc finger PHD-type profile. 225 270 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3686g00002 Gabi-Chr3686 50275 52716 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3686g00002 92 458 PHD Transcription Factor Family AT5G58610 43.005 7.16e-93 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Gabi3686g00002 Acetyltransf_1 2.2e-08 CL0257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3686g00002 - - aprc:113866262 528.094