Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3683g00010 ATGCTAACAGAAAGTTCTTTGCAGAAGATCCCATACAATTTCATTAGGAAATATGGTGGTGACATGCCAAACCCAATGTTTCTCAAGCCTCCAGATGGCACTGAATGGGAAATATTTTGGACTAAACATGATGGTGATGTTTGGCTTCAAAAGGGTTGGAAAGAATTTGCCAGATATTACTCCCTAGATCATGGTCATATGGTCTTGTTTGAATACATGCAAACTTGTCATTTTGAGGTACACATATTTGACAAGAGTACCCTTGAAATAGATTATCCTTTGCATGTCTCTCAAGATGTACAAGACAACTTTGACCAGATTAGTGATGAAGACTCAATTAAAATTTTGGATGAGATACCACCATGCCATAAGACGAGAGAAAAATCACCAATGTTTTCTCCTCAACCACGTAAAAAATCAAGGACTGGCACAAGTGGAGATGTTAAGAGAAGATCCCCTGAGCAAAATTTGCCCCATCATGTCCAAACTGAAGGCAAAAACTTTGAGAAGTCTAAATTTTCATCAGTAAAGAAAGAATCTGATGGTGAGACGGCAACTCACTGCCCCTTCACAAATGGAGCATTGAATGAAGCTAATAAATTTGCCTCAGAAAATCCCTTCTTCACAATCAATATTAACTCGGGAAATAGACCGCCTGTACCAAGGGCCTTCGTCAAAGAGTACTTCAATAATAAGACGCAGATTGTGAATTTCAAGTTTGGAAAGAAATTGTGGCCAGTAAAGTTGCTCTGTTATATGTTTTCTAGTGGTTGGTTCGCATTTGCAAGAGAAAGTGAATTGGTAGGTGGAGATGTTTGTGTCTTTGAGCTCATCAACAGAGAAGATGCACGTGTACCACCAGCCTTCCTCGAAGAGTACTTCAAGAACAAGACGCAGATTGTGATGTTACAATTTGAAAACAAATTGTGGCCTGTAAAGTTGCTCTGTTATCCACACAACAATTATGGTGTATTGTCTAGTGGTTGGTCCCAATTTGCAGGAGAAAGTGATTTGGTAGGTGGAGAGCTTTGTGTCTTTGAGCTCATCAACAGAGAAGATGCAGTGCTTCGTGTTCATATTTTCAGAGGCTACTGTTAG 1098 0.3953 MLTESSLQKIPYNFIRKYGGDMPNPMFLKPPDGTEWEIFWTKHDGDVWLQKGWKEFARYYSLDHGHMVLFEYMQTCHFEVHIFDKSTLEIDYPLHVSQDVQDNFDQISDEDSIKILDEIPPCHKTREKSPMFSPQPRKKSRTGTSGDVKRRSPEQNLPHHVQTEGKNFEKSKFSSVKKESDGETATHCPFTNGALNEANKFASENPFFTININSGNRPPVPRAFVKEYFNNKTQIVNFKFGKKLWPVKLLCYMFSSGWFAFARESELVGGDVCVFELINREDARVPPAFLEEYFKNKTQIVMLQFENKLWPVKLLCYPHNNYGVLSSGWSQFAGESDLVGGELCVFELINREDAVLRVHIFRGYC 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3683g00010 365 PANTHER B3 DOMAIN-CONTAINING 284 361 - -
Gabi3683g00010 365 Pfam B3 DNA binding domain 7 85 IPR003340 GO:0003677
Gabi3683g00010 365 Pfam B3 DNA binding domain 284 362 IPR003340 GO:0003677
Gabi3683g00010 365 Pfam B3 DNA binding domain 210 283 IPR003340 GO:0003677
Gabi3683g00010 365 CDD B3_DNA 211 281 IPR003340 GO:0003677
Gabi3683g00010 365 ProSiteProfiles B3 DNA-binding domain profile. 1 86 IPR003340 GO:0003677
Gabi3683g00010 365 MobiDBLite consensus disorder prediction 123 189 - -
Gabi3683g00010 365 Gene3D - 284 364 IPR015300 -
Gabi3683g00010 365 Gene3D - 191 283 IPR015300 -
Gabi3683g00010 365 Gene3D - 1 87 IPR015300 -
Gabi3683g00010 365 SMART B3_2 207 283 IPR003340 GO:0003677
Gabi3683g00010 365 SMART B3_2 284 364 IPR003340 GO:0003677
Gabi3683g00010 365 SMART B3_2 1 86 IPR003340 GO:0003677
Gabi3683g00010 365 SUPERFAMILY DNA-binding pseudobarrel domain 284 362 IPR015300 -
Gabi3683g00010 365 SUPERFAMILY DNA-binding pseudobarrel domain 202 279 IPR015300 -
Gabi3683g00010 365 ProSiteProfiles B3 DNA-binding domain profile. 285 364 IPR003340 GO:0003677
Gabi3683g00010 365 MobiDBLite consensus disorder prediction 142 184 - -
Gabi3683g00010 365 CDD B3_DNA 10 84 IPR003340 GO:0003677
Gabi3683g00010 365 SUPERFAMILY DNA-binding pseudobarrel domain 8 86 IPR015300 -
Gabi3683g00010 365 CDD B3_DNA 284 362 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3683g00010 Gabi-Chr3683 52841 56651 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3683g00010 9 282 B3 DNA Binding Superfamily AT3G18990 27.362 2.63e-28 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Gabi3683g00010 B3 2e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3683g00010 - - lang:109359484 266.544