Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3683g00009 ATGACTTATCATTGCAACGCGCAAAACAAGCATACTATCCACACTCCAATCCTTTTCTTCAAGATTATTCTTAGAACAAGTCTTCAAGATGGAAAGCTTAAACTCCCAAACAATTTCACTAGGAGATATGGTGGTAACATGCCAAACCCAATGTTTCTCAAGCCTCCAGATGGCACTGAATGGGAAGTATTTTGGACTAAAAAAGATGGTGATATTTGGCTTCAAAAGGGTTGGAAAGAATTTGCTACATATTACTCCCTAGATCATGGTCATTTGGTGTTGTTTGAATACAAGAAAACTTCTCAATTTGAGGTACGCATATGTGACAAGAGTACCCTTGAAATACAATATCCTTTCCATGACTCTCAAGATGTACAGGACAACCTTGATCAGATTAATGATGATTCAGTTAAAATTTCGGATGAGCTACCGTCATGCCATGAGACTAGACAGAAATCACCAATATCTTGTCCTCGTCGACGTAATAAATTGAGAACTGGCACAAGTGGAGATGTAGATAGAAGATCAGCTGACCAAAACCTGTCTCAGCATGTTCAAATTGAAGGACAAAGTACAAACTTTGATAAGTCTAAATTTGCATCTGTAAAGAAAGAATCAGATGAGGATATGGTTTGTACCACTGAACAGGACAACCTTGACCAGATTCATGATGACTCAGTCAAAAGTTTTGATGAGCGACCACCGTGCCGTATGGCTAGACAGAAAGCACCAATGTCTTGTCCTCGACCATGTAAAAGATTAAGAACTGGCACTAGTGGGGATGTTGAAAGAAGATCCACTTTGCGAAAGTTGCCTCAGCATGTCCAAATTAAGGAGGAAATGGATGGTACCGCTGAAAGCCTAATAGTGGAGCAGTTGACTTCTAAAAGAACTGAAGCTTTAAAGAAAGCCAAAACCTTCAGATCTAAAACTCCCTCTTTCACGATTGTCATGAAGCCTTCCTATCTTGATAAGCATCGATTGCATATCCCATTCCAATTTGCTGAAAAGTATTTGAAGAAAAAGGAAGGGAATATCCATCTTCAGGGCTTGGATGGGGGAACTTGGCATTGTGATTATAGACTGGGCAAAATTAATGCTGGATGGAAGAAATTTGTATCAGATAATAATTTGAAAGTGGGGGATGTTTGTCTTTTTGAGCTGACCAAGAGCCAAGGCCTTTCTTTCAAAGTACAAATCTTTAGACTTGCAGAAGAACCCCATTCCCTTCCAGTCCAAGGTTGGAAGACAACTCCATGCCCCTTGACAAATGGAGCTCTGAAAGAAGCTAAAAAATTCACTTCAGAAAATCCCATTTTCACGTTCAATTTTAGCCTGGGAAATAGACCGAATGTACCACGTTCCTTCATCAGAGAGCACTTCAATGAGAAGTCGCAGATTGTGAAGTTACAGTTTAGAAAGAAATTGTGGCCTGTAAAGTTTTACTATCGTCCACACAAAGTTTCTATTAGTGGGAAGTTTTCTAGTGGTTGGAGCGTATTTGCTAGGGAAAGTAAAATGGTGGATGGAGATGTTTGTCTGTTTGAGCTCATCAACAGAGAAGAGGCAGTGCTTGATGTTCATATTTTCAGAAGCCACTCTTAG 1605 0.3975 MTYHCNAQNKHTIHTPILFFKIILRTSLQDGKLKLPNNFTRRYGGNMPNPMFLKPPDGTEWEVFWTKKDGDIWLQKGWKEFATYYSLDHGHLVLFEYKKTSQFEVRICDKSTLEIQYPFHDSQDVQDNLDQINDDSVKISDELPSCHETRQKSPISCPRRRNKLRTGTSGDVDRRSADQNLSQHVQIEGQSTNFDKSKFASVKKESDEDMVCTTEQDNLDQIHDDSVKSFDERPPCRMARQKAPMSCPRPCKRLRTGTSGDVERRSTLRKLPQHVQIKEEMDGTAESLIVEQLTSKRTEALKKAKTFRSKTPSFTIVMKPSYLDKHRLHIPFQFAEKYLKKKEGNIHLQGLDGGTWHCDYRLGKINAGWKKFVSDNNLKVGDVCLFELTKSQGLSFKVQIFRLAEEPHSLPVQGWKTTPCPLTNGALKEAKKFTSENPIFTFNFSLGNRPNVPRSFIREHFNEKSQIVKLQFRKKLWPVKFYYRPHKVSISGKFSSGWSVFARESKMVDGDVCLFELINREEAVLDVHIFRSHS 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3683g00009 534 Coils Coil 533 534 - -
Gabi3683g00009 534 CDD B3_DNA 312 402 IPR003340 GO:0003677
Gabi3683g00009 534 Gene3D - 14 112 IPR015300 -
Gabi3683g00009 534 SUPERFAMILY DNA-binding pseudobarrel domain 309 403 IPR015300 -
Gabi3683g00009 534 Gene3D - 423 533 IPR015300 -
Gabi3683g00009 534 Gene3D - 293 405 IPR015300 -
Gabi3683g00009 534 CDD B3_DNA 447 531 IPR003340 GO:0003677
Gabi3683g00009 534 ProSiteProfiles B3 DNA-binding domain profile. 18 111 IPR003340 GO:0003677
Gabi3683g00009 534 MobiDBLite consensus disorder prediction 147 179 - -
Gabi3683g00009 534 ProSiteProfiles B3 DNA-binding domain profile. 435 533 IPR003340 GO:0003677
Gabi3683g00009 534 ProSiteProfiles B3 DNA-binding domain profile. 313 404 IPR003340 GO:0003677
Gabi3683g00009 534 CDD B3_DNA 18 109 IPR003340 GO:0003677
Gabi3683g00009 534 SMART B3_2 314 404 IPR003340 GO:0003677
Gabi3683g00009 534 SMART B3_2 19 111 IPR003340 GO:0003677
Gabi3683g00009 534 SMART B3_2 439 533 IPR003340 GO:0003677
Gabi3683g00009 534 MobiDBLite consensus disorder prediction 238 263 - -
Gabi3683g00009 534 Pfam B3 DNA binding domain 315 402 IPR003340 GO:0003677
Gabi3683g00009 534 Pfam B3 DNA binding domain 451 532 IPR003340 GO:0003677
Gabi3683g00009 534 Pfam B3 DNA binding domain 20 110 IPR003340 GO:0003677
Gabi3683g00009 534 SUPERFAMILY DNA-binding pseudobarrel domain 434 532 IPR015300 -
Gabi3683g00009 534 SUPERFAMILY DNA-binding pseudobarrel domain 17 111 IPR015300 -
Gabi3683g00009 534 PANTHER B3 DOMAIN-CONTAINING 305 528 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3683g00009 Gabi-Chr3683 35457 38864 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3683g00009 19 152 B3 DNA Binding Superfamily AT4G01580 31.111 7.91e-19 82.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Gabi3683g00009 B3 1e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3683g00009 - - tpra:123895950 400.979