Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3683g00008 ATGACTTATCATTGCAACGCGCAAAACAAGCATACTATCCACACTCCAATCCTTTTCTTCAAGATTATTCTTAGAACAAGTCTTCAAGATGGAAAGCTTAAACTCCCAAACAATTTCACTAGGAGATATGGTGGTAACATGCCAAACCCAATGTTTCTCAAGCCTCCAGATGGCACTGAATGGGAAGTATTTTGGACTAAAAAAGATGGTGATATTTGGCTTCAAAAGGGTTGGAAAGAATTTGCTACATATTACTCCCTAGATCATGGTCATTTGGTGTTGTTTGAATACAAGAAAACTTCTCAATTTGAGGACAACCTTGATCAGATTAATGATGATTCAGTTAAAATTTCGGATGAGCTACCGTCATGCCATGAGACTAGACAGAAATCACCAATATCTTGTCCTCGTCGACGTAATAAATTGAGAACTGGCACAAGTGGAGATGTAGATAGAAGATCAGCTGACCAAAACCTGTCTCAGCATGTTCAAATTGAAGGACAAAGTACAAACTTTGATAAGTCTAAATTTGCATCTGTAAAGAAAGAATCAGATGAGGATATGGTTTGTACCACTGAACAGGACAACCTTGACCAGATTCATGATGACTCAGTCAAAAGTTTTGATGAGCGACCACCGTGCCGTATGGCTAGACAGAAAGCACCAATGTCTTGTCCTCGACCATGTAAAAGATTAAGAACTGGCACTAGTGGGGATGTTGAAAGAAGATCCACTTTGCGAAAGTTGCCTCAGCATGTCCAAATTAAGGAGGAAATGGATGGTACCGCTGAAAGCCTAATAGTGGAGCAGTTGACTTCTAAAAGAACTGAAGCTTTAAAGAAAGCCAAAACCTTCAGATCTAAAACTCCCTCTTTCACGATTGTCATGAAGCCTTCCTATCTTGATAAGCATCGATTGCATATCCCATTCCAATTTGCTGAAAAGTATTTGAAGAAAAAGGAAGGGAATATCCATCTTCAGGGCTTGGATGGGGGAACTTGGCATTGTGATTATAGACTGGGCAAAATTAATGCTGGATGGAAGAAATTTGTATCAGATAATAATTTGAAAGTGGGGGATGTTTGTCTTTTTGAGCTGACCAAGAGCCAAGGCCTTTCTTTCAAAGTACAAATCTTTAGACTTGCAGAAGAACCCCATTCCCTTCCAGTCCAAGGTTGGAAGACAACTCCATGCCCCTTGACAAATGGAGCTCTGAAAGAAGCTAAAAAATTCACTTCAGAAAATCCCATTTTCACGTTCAATTTTAGCCTGGGAAATAGACCGAATGTACCACGTTCCTTCATCAGAGAGCACTTCAATGAGAAGTCGCAGATTGTGAAGTTACAGTTTAGAAAGAAATTGTGGCCTGTAAAGTTTTACTATCGTCCACACAAAGTTTCTATTAGTGGGAAGTTTTCTAGTGGTTGGAGCGTATTTGCTAGGGAAAGTAAAATGGTGGATGGAGATGTTTGTCTGTTTGAGCTCATCAACAGAGAAGAGGCAGTGCTTGATGTTCATATTTTCAGAAGCCACTCTTAG 1539 0.3977 MTYHCNAQNKHTIHTPILFFKIILRTSLQDGKLKLPNNFTRRYGGNMPNPMFLKPPDGTEWEVFWTKKDGDIWLQKGWKEFATYYSLDHGHLVLFEYKKTSQFEDNLDQINDDSVKISDELPSCHETRQKSPISCPRRRNKLRTGTSGDVDRRSADQNLSQHVQIEGQSTNFDKSKFASVKKESDEDMVCTTEQDNLDQIHDDSVKSFDERPPCRMARQKAPMSCPRPCKRLRTGTSGDVERRSTLRKLPQHVQIKEEMDGTAESLIVEQLTSKRTEALKKAKTFRSKTPSFTIVMKPSYLDKHRLHIPFQFAEKYLKKKEGNIHLQGLDGGTWHCDYRLGKINAGWKKFVSDNNLKVGDVCLFELTKSQGLSFKVQIFRLAEEPHSLPVQGWKTTPCPLTNGALKEAKKFTSENPIFTFNFSLGNRPNVPRSFIREHFNEKSQIVKLQFRKKLWPVKFYYRPHKVSISGKFSSGWSVFARESKMVDGDVCLFELINREEAVLDVHIFRSHS 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3683g00008 512 SUPERFAMILY DNA-binding pseudobarrel domain 287 381 IPR015300 -
Gabi3683g00008 512 SMART B3_2 292 382 IPR003340 GO:0003677
Gabi3683g00008 512 SMART B3_2 19 106 IPR003340 GO:0003677
Gabi3683g00008 512 SMART B3_2 417 511 IPR003340 GO:0003677
Gabi3683g00008 512 MobiDBLite consensus disorder prediction 216 241 - -
Gabi3683g00008 512 Gene3D - 401 511 IPR015300 -
Gabi3683g00008 512 Gene3D - 271 383 IPR015300 -
Gabi3683g00008 512 SUPERFAMILY DNA-binding pseudobarrel domain 17 103 IPR015300 -
Gabi3683g00008 512 ProSiteProfiles B3 DNA-binding domain profile. 291 382 IPR003340 GO:0003677
Gabi3683g00008 512 MobiDBLite consensus disorder prediction 121 157 - -
Gabi3683g00008 512 ProSiteProfiles B3 DNA-binding domain profile. 413 511 IPR003340 GO:0003677
Gabi3683g00008 512 ProSiteProfiles B3 DNA-binding domain profile. 18 111 IPR003340 GO:0003677
Gabi3683g00008 512 CDD B3_DNA 290 380 IPR003340 GO:0003677
Gabi3683g00008 512 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 406 510 IPR044837 -
Gabi3683g00008 512 Gene3D - 14 106 IPR015300 -
Gabi3683g00008 512 CDD B3_DNA 18 101 IPR003340 GO:0003677
Gabi3683g00008 512 Pfam B3 DNA binding domain 429 510 IPR003340 GO:0003677
Gabi3683g00008 512 Pfam B3 DNA binding domain 20 104 IPR003340 GO:0003677
Gabi3683g00008 512 Pfam B3 DNA binding domain 293 380 IPR003340 GO:0003677
Gabi3683g00008 512 SUPERFAMILY DNA-binding pseudobarrel domain 412 510 IPR015300 -
Gabi3683g00008 512 CDD B3_DNA 425 509 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3683g00008 Gabi-Chr3683 35457 38864 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3683g00008 404 509 B3 DNA Binding Superfamily AT3G18990 33.043 3.03e-11 63.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Gabi3683g00008 B3 9.6e-11 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3683g00008 - - ccaj:109791753 355.525