Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3683g00007 ATGACTTATCATTGCAACGCGCAAAACAAGCATACTATCCACACTCCAATCCTTTTCTTCAAGATTATTCTTAGAACAAGTCTTCAAGATGGAAAGCTTAAACTCCCAAACAATTTCACTAGGAGATATGGTGGTAACATGCCAAACCCAATGTTTCTCAAGCCTCCAGATGGCACTGAATGGGAAGTATTTTGGACTAAAAAAGATGGTGATATTTGGCTTCAAAAGGGTTGGAAAGAATTTGCTACATATTACTCCCTAGATCATGGTCATTTGGTGTTGTTTGAATACAAGAAAACTTCTCAATTTGAGATTAATGATGATTCAGTTAAAATTTCGGATGAGCTACCGTCATGCCATGAGACTAGACAGAAATCACCAATATCTTGTCCTCGTCGACGTAATAAATTGAGAACTGGCACAAGTGGAGATGTAGATAGAAGATCAGCTGACCAAAACCTGTCTCAGCATGTTCAAATTGAAGGACAAAGTACAAACTTTGATAAGTCTAAATTTGCATCTGTAAAGAAAGAATCAGATGAGGATATGGTTTGTACCACTGAACAGGACAACCTTGACCAGATTCATGATGACTCAGTCAAAAGTTTTGATGAGCGACCACCGTGCCGTATGGCTAGACAGAAAGCACCAATGTCTTGTCCTCGACCATGTAAAAGATTAAGAACTGGCACTAGTGGGGATGTTGAAAGAAGATCCACTTTGCGAAAGTTGCCTCAGCATGTCCAAATTAAGGAGGAAATGGATGGTACCGCTGAAAGCCTAATAGTGGAGCAGTTGACTTCTAAAAGAACTGAAGCTTTAAAGAAAGCCAAAACCTTCAGATCTAAAACTCCCTCTTTCACGATTGTCATGAAGCCTTCCTATCTTGATAAGCATCGATTGCATATCCCATTCCAATTTGCTGAAAAGTATTTGAAGAAAAAGGAAGGGAATATCCATCTTCAGGGCTTGGATGGGGGAACTTGGCATTGTGATTATAGACTGGGCAAAATTAATGCTGGATGGAAGAAATTTGTATCAGATAATAATTTGAAAGTGGGGGATGTTTGTCTTTTTGAGCTGACCAAGAGCCAAGGCCTTTCTTTCAAAGTACAAATCTTTAGACTTGCAGAAGAACCCCATTCCCTTCCAGTCCAAGGTTGGAAGACAACTCCATGCCCCTTGACAAATGGAGCTCTGAAAGAAGCTAAAAAATTCACTTCAGAAAATCCCATTTTCACGTTCAATTTTAGCCTGGGAAATAGACCGAATGTACCACGTTCCTTCATCAGAGAGCACTTCAATGAGAAGTCGCAGATTGTGAAGTTACAGTTTAGAAAGAAATTGTGGCCTGTAAAGTTTTACTATCGTCCACACAAAGTTTCTATTAGTGGGAAGTTTTCTAGTGGTTGGAGCGTATTTGCTAGGGAAAGTAAAATGGTGGATGGAGATGTTTGTCTGTTTGAGCTCATCAACAGAGAAGAGGCAGTGCTTGATGTTCATATTTTCAGAAGCCACTCTTAG 1524 0.397 MTYHCNAQNKHTIHTPILFFKIILRTSLQDGKLKLPNNFTRRYGGNMPNPMFLKPPDGTEWEVFWTKKDGDIWLQKGWKEFATYYSLDHGHLVLFEYKKTSQFEINDDSVKISDELPSCHETRQKSPISCPRRRNKLRTGTSGDVDRRSADQNLSQHVQIEGQSTNFDKSKFASVKKESDEDMVCTTEQDNLDQIHDDSVKSFDERPPCRMARQKAPMSCPRPCKRLRTGTSGDVERRSTLRKLPQHVQIKEEMDGTAESLIVEQLTSKRTEALKKAKTFRSKTPSFTIVMKPSYLDKHRLHIPFQFAEKYLKKKEGNIHLQGLDGGTWHCDYRLGKINAGWKKFVSDNNLKVGDVCLFELTKSQGLSFKVQIFRLAEEPHSLPVQGWKTTPCPLTNGALKEAKKFTSENPIFTFNFSLGNRPNVPRSFIREHFNEKSQIVKLQFRKKLWPVKFYYRPHKVSISGKFSSGWSVFARESKMVDGDVCLFELINREEAVLDVHIFRSHS 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3683g00007 507 CDD B3_DNA 18 105 IPR003340 GO:0003677
Gabi3683g00007 507 SMART B3_2 19 109 IPR003340 GO:0003677
Gabi3683g00007 507 SMART B3_2 287 377 IPR003340 GO:0003677
Gabi3683g00007 507 SMART B3_2 412 506 IPR003340 GO:0003677
Gabi3683g00007 507 CDD B3_DNA 420 504 IPR003340 GO:0003677
Gabi3683g00007 507 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 401 505 IPR044837 -
Gabi3683g00007 507 Gene3D - 14 109 IPR015300 -
Gabi3683g00007 507 MobiDBLite consensus disorder prediction 116 154 - -
Gabi3683g00007 507 SUPERFAMILY DNA-binding pseudobarrel domain 17 104 IPR015300 -
Gabi3683g00007 507 CDD B3_DNA 285 375 IPR003340 GO:0003677
Gabi3683g00007 507 MobiDBLite consensus disorder prediction 211 236 - -
Gabi3683g00007 507 ProSiteProfiles B3 DNA-binding domain profile. 286 377 IPR003340 GO:0003677
Gabi3683g00007 507 ProSiteProfiles B3 DNA-binding domain profile. 408 506 IPR003340 GO:0003677
Gabi3683g00007 507 ProSiteProfiles B3 DNA-binding domain profile. 18 111 IPR003340 GO:0003677
Gabi3683g00007 507 Pfam B3 DNA binding domain 424 505 IPR003340 GO:0003677
Gabi3683g00007 507 Pfam B3 DNA binding domain 288 375 IPR003340 GO:0003677
Gabi3683g00007 507 Pfam B3 DNA binding domain 20 104 IPR003340 GO:0003677
Gabi3683g00007 507 SUPERFAMILY DNA-binding pseudobarrel domain 407 505 IPR015300 -
Gabi3683g00007 507 SUPERFAMILY DNA-binding pseudobarrel domain 282 376 IPR015300 -
Gabi3683g00007 507 Gene3D - 396 506 IPR015300 -
Gabi3683g00007 507 Gene3D - 266 378 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3683g00007 Gabi-Chr3683 35457 38864 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3683g00007 399 504 B3 DNA Binding Superfamily AT3G18990 33.043 3.31e-11 63.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Gabi3683g00007 B3 9.5e-11 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3683g00007 - - ccaj:109791753 357.836