Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3683g00006 ATGCTAACAGAAAGTTCTTTGCAGAAGATCCCAAACAATTTCATTAGGAAATATGGTGGTGACATGTCAAACCCAATGTTTCTTAAGCCTCCAGATGGCACTGAATGGGAAGTATTTTGGACTAAACATGATGGTGTTACTTGGCTTCAAAGGGGTTGGATAGCATTTGCCACATATTACTCCCTGGATCATGGTCATTTGGTGTTGTTTGAATACAAGCAAACTTGTAATTTTGAGGTACACATATTTGACAAGAGTACCCTTGAAATAGATTATCCTTTGCATGTCCCTCAAGATGCACAGGACAACCTTGACCAGATGAGTGATGATGACTCGATTAAAATTTTGGATGAGATACCACCATGCCATAAGACTAGAGAAAAATCACCAATGTCTTCTCCTCAACCACGTAAAAAATCAAGAACTGACACAAGTGGAGATGTTATGAGAAGATCCACAGAGCAAAACTTGCCCCAGCAAGTCCAAACTGAAGGCACAAACTTTGAGAAGTCTAAATTTGCATCTGTAAAGAAAGAATCGGATGAATCAGTTCAAAGAGAGGGAATCAATTGGCTAGATTCTCAGAGAGTCGTGGATGTGGAAAATAAAACTGTTGTTACTAGAAAAGGTGAGAAGGCAACTCACTGCCCCTTCACAAACGAAGCACTGAAAGAAGCTAATAAATTTGCCTCAGAAAATCCCTTTTTCACATTCAATATTAAGGCGGGACTTAGACCGCATGTACCAAGGGCCTTCATCAGAGAGTACTTGAATAACAAGAGACAGATTGTGAAGTTACAATTTGGAAAGAAATTGTGGCCTGTAAAGTTGCTCTGCTATCGACACAACTCTTCAGCTATGTTTTCTAGTGGTTGGTCCCAATTTGCAAGAGAAAGTGAATTGTTAGGTGGAGATGTTTGTGTCTTTGAGCTTATCAACAGAGAAGATGCAGTGATTGATGTTCATATTTTTAGAGGCCAAGGTTAG 987 0.3951 MLTESSLQKIPNNFIRKYGGDMSNPMFLKPPDGTEWEVFWTKHDGVTWLQRGWIAFATYYSLDHGHLVLFEYKQTCNFEVHIFDKSTLEIDYPLHVPQDAQDNLDQMSDDDSIKILDEIPPCHKTREKSPMSSPQPRKKSRTDTSGDVMRRSTEQNLPQQVQTEGTNFEKSKFASVKKESDESVQREGINWLDSQRVVDVENKTVVTRKGEKATHCPFTNEALKEANKFASENPFFTFNIKAGLRPHVPRAFIREYLNNKRQIVKLQFGKKLWPVKLLCYRHNSSAMFSSGWSQFARESELLGGDVCVFELINREDAVIDVHIFRGQG 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3683g00006 328 Gene3D - 218 327 IPR015300 -
Gabi3683g00006 328 ProSiteProfiles B3 DNA-binding domain profile. 1 86 IPR003340 GO:0003677
Gabi3683g00006 328 MobiDBLite consensus disorder prediction 119 148 - -
Gabi3683g00006 328 SUPERFAMILY DNA-binding pseudobarrel domain 2 93 IPR015300 -
Gabi3683g00006 328 CDD B3_DNA 245 325 IPR003340 GO:0003677
Gabi3683g00006 328 Pfam B3 DNA binding domain 7 85 IPR003340 GO:0003677
Gabi3683g00006 328 Pfam B3 DNA binding domain 247 326 IPR003340 GO:0003677
Gabi3683g00006 328 SUPERFAMILY DNA-binding pseudobarrel domain 230 325 IPR015300 -
Gabi3683g00006 328 MobiDBLite consensus disorder prediction 149 170 - -
Gabi3683g00006 328 PANTHER B3 DOMAIN-CONTAINING 9 322 - -
Gabi3683g00006 328 MobiDBLite consensus disorder prediction 119 179 - -
Gabi3683g00006 328 SMART B3_2 1 86 IPR003340 GO:0003677
Gabi3683g00006 328 SMART B3_2 235 327 IPR003340 GO:0003677
Gabi3683g00006 328 Gene3D - 1 87 IPR015300 -
Gabi3683g00006 328 CDD B3_DNA 10 84 IPR003340 GO:0003677
Gabi3683g00006 328 ProSiteProfiles B3 DNA-binding domain profile. 248 327 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3683g00006 Gabi-Chr3683 24311 25802 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3683g00006 1 325 B3 DNA Binding Superfamily AT3G18990 27.035 2.38e-32 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Gabi3683g00006 B3 3.8e-13 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3683g00006 - - lang:109359484 337.035