Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3683g00005 ATGTCAAACCCAATGTTTCTCAAACCTCCAGATGGCACTGAATGGGAAGTATTTTGGACTAAACATGATGGTGATATTTGGCTTCAAAAGGGTTGGAAAGAATTTGCTACATATTACTCTCTAGATCATGGTCATTTGGTGTTGTTTGAATACAAGCAAACTTGTCATTTTGAGGTACACATATTTGACAAGAGTACCCTTGAAATAGATTATCCTCTGCATGTCTCTCAAGATGTACAGTACAACCTTGACCAGATCAGTGATGATGACTCAGTTAAAATTTTAGATGAGATACCACCATGCCATAAGACTAGACAAAAATCACCAATGCCTTCTCCTCAACCATGTAAAAAATCAAGAACTGGCGCAAGTGGAGATGTTAAGAGAAGATCCACAGAGCAAAACTTGCCTCAGCATGTCCAAACTGAAGGCACAAACTTTGAGAAGTCTAAATTTTCATCTGTAAAGAAAGAATCGGATGAATCAGTTCAAGGAGAGGGAATCAATTGGCTAGACCCTCAGAGAGTTGTGGATGTTGAAAATACAACTGTTGTTACCAGAAAAGGTGAGAAGGCTACTCACTGCCCCTTCACAAATGGAGCACTGAATGAAGCTAATAAATTTGCCTCAGAAAATCCCTTTTTCACAATCAATATTAACTCGGGAGTTAGACCGCATGTACCAAGAGCCTTCATCAAAGAGTGCTTGAATAACAAGACGCAGATTGTGAAGTTACAATTTGGAAAGAAATTGTGGCCTGTAAAGTTGCTTGGTTATCCACGCAACAATGGCATATTGTCTAGTGGTTGGTCCCAATTTGCAGGAGAAAGTGAATTGTTAGGTGGAGAGCTTTGTGTCTTGGAGCTCATCAATAGAGAAGATGCAGTGCTTCGTGTTCATATTTTCAGAGGCCACTGTTAG 921 0.3974 MSNPMFLKPPDGTEWEVFWTKHDGDIWLQKGWKEFATYYSLDHGHLVLFEYKQTCHFEVHIFDKSTLEIDYPLHVSQDVQYNLDQISDDDSVKILDEIPPCHKTRQKSPMPSPQPCKKSRTGASGDVKRRSTEQNLPQHVQTEGTNFEKSKFSSVKKESDESVQGEGINWLDPQRVVDVENTTVVTRKGEKATHCPFTNGALNEANKFASENPFFTININSGVRPHVPRAFIKECLNNKTQIVKLQFGKKLWPVKLLGYPRNNGILSSGWSQFAGESELLGGELCVLELINREDAVLRVHIFRGHC 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3683g00005 306 ProSiteProfiles B3 DNA-binding domain profile. 1 65 IPR003340 GO:0003677
Gabi3683g00005 306 SUPERFAMILY DNA-binding pseudobarrel domain 209 304 IPR015300 -
Gabi3683g00005 306 SUPERFAMILY DNA-binding pseudobarrel domain 3 72 IPR015300 -
Gabi3683g00005 306 ProSiteProfiles B3 DNA-binding domain profile. 210 305 IPR003340 GO:0003677
Gabi3683g00005 306 PANTHER B3 DOMAIN-CONTAINING 1 300 - -
Gabi3683g00005 306 Gene3D - 198 305 IPR015300 -
Gabi3683g00005 306 CDD B3_DNA 218 303 IPR003340 GO:0003677
Gabi3683g00005 306 Pfam B3 DNA binding domain 5 64 IPR003340 GO:0003677
Gabi3683g00005 306 Pfam B3 DNA binding domain 225 304 IPR003340 GO:0003677
Gabi3683g00005 306 MobiDBLite consensus disorder prediction 100 166 - -
Gabi3683g00005 306 MobiDBLite consensus disorder prediction 128 149 - -
Gabi3683g00005 306 Gene3D - 1 66 IPR015300 -
Gabi3683g00005 306 SMART B3_2 214 305 IPR003340 GO:0003677
Gabi3683g00005 306 CDD B3_DNA 2 63 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3683g00005 Gabi-Chr3683 12915 16228 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3683g00005 1 303 B3 DNA Binding Superfamily AT3G18990 26.349 3.41e-29 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Gabi3683g00005 B3 9e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3683g00005 - - lang:109359484 296.589