Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3683g00003 ATGAGTAAGCACCCTCACCCCACTCCAATCCTTTTCTTCAAGATTATTCCTGGAACAAGTCTTGCAGATGGAAAGCTTATTCCATACAATTTCGTTAGGAAATATGGTGGTGACATGTCAAACCCAATGTTTCTCAAACCTCCAGATGGCACTGAATGGGAAGTATTTTGGACTAAACATGATGGTGATATTTGGCTTCAAAAGGGTTGGAAAGAATTTGCTACATATTACTCTCTAGATCATGGTCATTTGGTGTTGTTTGAATACAAGCAAACTTGTCATTTTGAGGTACACATATTTGACAAGAGTACCCTTGAAATAGATTATCCTCTGCATGTCTCTCAAGATGTACAGTACAACCTTGACCAGATCAGTGATGATGACTCAGTTAAAATTTTAGATGAGATACCACCATGCCATAAGACTAGACAAAAATCACCAATGCCTTCTCCTCAACCATGTAAAAAATCAAGAACTGGCGCAAGTGGAGATGTTAAGAGAAGATCCACAGAGCAAAACTTGCCTCAGCATGTCCAAACTGAAGGCACAAACTTTGAGAAGTCTAAATTTTCATCTGTAAAGAAAGAATCGGATGAATCAGTTCAAGGAGAGGGAATCAATTGGCTAGACCCTCAGAGAGTTGTGGATGTTGAAAATACAACTGTTGTTACCAGAAAAGGTGAGAAGGCTACTCACTGCCCCTTCACAAATGGAGCACTGAATGAAGCTAATAAATTTGCCTCAGAAAATCCCTTTTTCACAATCAATATTAACTCGGGAGTTAGACCGCATGTACCAAGAGCCTTCATCAAAGAGTGCTTGAATAACAAGACGCAGATTGTGAAGTTACAATTTGGAAAGAAATTGTGGCCTGTAAAGTTGCTTGGTTATCCACGCAACAATGGCATATTGTCTAGTGGTTGGTCCCAATTTGCAGGAGAAAGTGAATTGTTAGGTGGAGAGCTTTGTGTCTTGGAGCTCATCAATAGAGAAGATGCAGTGCTTCGTGTTCATATTTTCAGAGGCCACTGTTAG 1035 0.399 MSKHPHPTPILFFKIIPGTSLADGKLIPYNFVRKYGGDMSNPMFLKPPDGTEWEVFWTKHDGDIWLQKGWKEFATYYSLDHGHLVLFEYKQTCHFEVHIFDKSTLEIDYPLHVSQDVQYNLDQISDDDSVKILDEIPPCHKTRQKSPMPSPQPCKKSRTGASGDVKRRSTEQNLPQHVQTEGTNFEKSKFSSVKKESDESVQGEGINWLDPQRVVDVENTTVVTRKGEKATHCPFTNGALNEANKFASENPFFTININSGVRPHVPRAFIKECLNNKTQIVKLQFGKKLWPVKLLGYPRNNGILSSGWSQFAGESELLGGELCVLELINREDAVLRVHIFRGHC 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3683g00003 344 CDD B3_DNA 256 341 IPR003340 GO:0003677
Gabi3683g00003 344 SMART B3_2 252 343 IPR003340 GO:0003677
Gabi3683g00003 344 SMART B3_2 12 103 IPR003340 GO:0003677
Gabi3683g00003 344 Pfam B3 DNA binding domain 14 102 IPR003340 GO:0003677
Gabi3683g00003 344 Pfam B3 DNA binding domain 263 342 IPR003340 GO:0003677
Gabi3683g00003 344 MobiDBLite consensus disorder prediction 166 187 - -
Gabi3683g00003 344 ProSiteProfiles B3 DNA-binding domain profile. 10 103 IPR003340 GO:0003677
Gabi3683g00003 344 MobiDBLite consensus disorder prediction 138 204 - -
Gabi3683g00003 344 SUPERFAMILY DNA-binding pseudobarrel domain 247 342 IPR015300 -
Gabi3683g00003 344 PANTHER B3 DOMAIN-CONTAINING 4 338 - -
Gabi3683g00003 344 CDD B3_DNA 11 101 IPR003340 GO:0003677
Gabi3683g00003 344 ProSiteProfiles B3 DNA-binding domain profile. 248 343 IPR003340 GO:0003677
Gabi3683g00003 344 Gene3D - 8 104 IPR015300 -
Gabi3683g00003 344 Gene3D - 236 343 IPR015300 -
Gabi3683g00003 344 SUPERFAMILY DNA-binding pseudobarrel domain 6 103 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3683g00003 Gabi-Chr3683 12915 16228 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3683g00003 7 341 B3 DNA Binding Superfamily AT3G18990 26.724 2.14e-33 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Gabi3683g00003 B3 1.1e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3683g00003 - - lang:109359484 322.398