Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3683g00002 ATGAGTAAGCACCCTCACCCCACTCCAATCCTTTTCTTCAAGATTATTCCTGGAACAAGTCTTGCAGATGGAAAGCTTAAGATTCCATACAATTTCGTTAGGAAATATGGTGGTGACATGTCAAACCCAATGTTTCTCAAACCTCCAGATGGCACTGAATGGGAAGTATTTTGGACTAAACATGATGGTGATATTTGGCTTCAAAAGGGTTGGAAAGAATTTGCTACATATTACTCTCTAGATCATGGTCATTTGGTGTTGTTTGAATACAAGCAAACTTGTCATTTTGAGGTACACATATTTGACAAGAGTACCCTTGAAATAGATTATCCTCTGCATGTCTCTCAAGATGTACAGTACAACCTTGACCAGATCAGTGATGATGACTCAGTTAAAATTTTAGATGAGATACCACCATGCCATAAGACTAGACAAAAATCACCAATGCCTTCTCCTCAACCATGTAAAAAATCAAGAACTGGCGCAAGTGGAGATGTTAAGAGAAGATCCACAGAGCAAAACTTGCCTCAGCATGTCCAAACTGAAGGCACAAACTTTGAGAAGTCTAAATTTTCATCTGTAAAGAAAGAATCGGATGTTCAAGGAGAGGGAATCAATTGGCTAGACCCTCAGAGAGTTGTGGATGTTGAAAATACAACTGTTGTTACCAGAAAAGGTGAGAAGGCTACTCACTGCCCCTTCACAAATGGAGCACTGAATGAAGCTAATAAATTTGCCTCAGAAAATCCCTTTTTCACAATCAATATTAACTCGGGAGTTAGACCGCATGTACCAAGAGCCTTCATCAAAGAGTGCTTGAATAACAAGACGCAGATTGTGAAGTTACAATTTGGAAAGAAATTGTGGCCTGTAAAGTTGCTTGGTTATCCACGCAACAATGGCATATTGTCTAGTGGTTGGTCCCAATTTGCAGGAGAAAGTGAATTGTTAGGTGGAGAGCTTTGTGTCTTGGAGCTCATCAATAGAGAAGATGCAGTGCTTCGTGTTCATATTTTCAGAGGCCACTGTTAG 1032 0.3992 MSKHPHPTPILFFKIIPGTSLADGKLKIPYNFVRKYGGDMSNPMFLKPPDGTEWEVFWTKHDGDIWLQKGWKEFATYYSLDHGHLVLFEYKQTCHFEVHIFDKSTLEIDYPLHVSQDVQYNLDQISDDDSVKILDEIPPCHKTRQKSPMPSPQPCKKSRTGASGDVKRRSTEQNLPQHVQTEGTNFEKSKFSSVKKESDVQGEGINWLDPQRVVDVENTTVVTRKGEKATHCPFTNGALNEANKFASENPFFTININSGVRPHVPRAFIKECLNNKTQIVKLQFGKKLWPVKLLGYPRNNGILSSGWSQFAGESELLGGELCVLELINREDAVLRVHIFRGHC 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3683g00002 343 Gene3D - 235 342 IPR015300 -
Gabi3683g00002 343 MobiDBLite consensus disorder prediction 139 193 - -
Gabi3683g00002 343 ProSiteProfiles B3 DNA-binding domain profile. 11 104 IPR003340 GO:0003677
Gabi3683g00002 343 Gene3D - 8 105 IPR015300 -
Gabi3683g00002 343 Pfam B3 DNA binding domain 262 341 IPR003340 GO:0003677
Gabi3683g00002 343 Pfam B3 DNA binding domain 13 103 IPR003340 GO:0003677
Gabi3683g00002 343 PANTHER B3 DOMAIN-CONTAINING 4 337 - -
Gabi3683g00002 343 SUPERFAMILY DNA-binding pseudobarrel domain 6 104 IPR015300 -
Gabi3683g00002 343 SUPERFAMILY DNA-binding pseudobarrel domain 246 341 IPR015300 -
Gabi3683g00002 343 ProSiteProfiles B3 DNA-binding domain profile. 247 342 IPR003340 GO:0003677
Gabi3683g00002 343 SMART B3_2 251 342 IPR003340 GO:0003677
Gabi3683g00002 343 SMART B3_2 12 104 IPR003340 GO:0003677
Gabi3683g00002 343 CDD B3_DNA 255 340 IPR003340 GO:0003677
Gabi3683g00002 343 CDD B3_DNA 11 102 IPR003340 GO:0003677
Gabi3683g00002 343 MobiDBLite consensus disorder prediction 167 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3683g00002 Gabi-Chr3683 12915 16228 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3683g00002 7 340 B3 DNA Binding Superfamily AT3G18990 29.143 1.03e-35 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Gabi3683g00002 B3 1.1e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3683g00002 - - lang:109359484 324.324