Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Gabi3683g00002 | ATGAGTAAGCACCCTCACCCCACTCCAATCCTTTTCTTCAAGATTATTCCTGGAACAAGTCTTGCAGATGGAAAGCTTAAGATTCCATACAATTTCGTTAGGAAATATGGTGGTGACATGTCAAACCCAATGTTTCTCAAACCTCCAGATGGCACTGAATGGGAAGTATTTTGGACTAAACATGATGGTGATATTTGGCTTCAAAAGGGTTGGAAAGAATTTGCTACATATTACTCTCTAGATCATGGTCATTTGGTGTTGTTTGAATACAAGCAAACTTGTCATTTTGAGGTACACATATTTGACAAGAGTACCCTTGAAATAGATTATCCTCTGCATGTCTCTCAAGATGTACAGTACAACCTTGACCAGATCAGTGATGATGACTCAGTTAAAATTTTAGATGAGATACCACCATGCCATAAGACTAGACAAAAATCACCAATGCCTTCTCCTCAACCATGTAAAAAATCAAGAACTGGCGCAAGTGGAGATGTTAAGAGAAGATCCACAGAGCAAAACTTGCCTCAGCATGTCCAAACTGAAGGCACAAACTTTGAGAAGTCTAAATTTTCATCTGTAAAGAAAGAATCGGATGTTCAAGGAGAGGGAATCAATTGGCTAGACCCTCAGAGAGTTGTGGATGTTGAAAATACAACTGTTGTTACCAGAAAAGGTGAGAAGGCTACTCACTGCCCCTTCACAAATGGAGCACTGAATGAAGCTAATAAATTTGCCTCAGAAAATCCCTTTTTCACAATCAATATTAACTCGGGAGTTAGACCGCATGTACCAAGAGCCTTCATCAAAGAGTGCTTGAATAACAAGACGCAGATTGTGAAGTTACAATTTGGAAAGAAATTGTGGCCTGTAAAGTTGCTTGGTTATCCACGCAACAATGGCATATTGTCTAGTGGTTGGTCCCAATTTGCAGGAGAAAGTGAATTGTTAGGTGGAGAGCTTTGTGTCTTGGAGCTCATCAATAGAGAAGATGCAGTGCTTCGTGTTCATATTTTCAGAGGCCACTGTTAG | 1032 | 0.3992 | MSKHPHPTPILFFKIIPGTSLADGKLKIPYNFVRKYGGDMSNPMFLKPPDGTEWEVFWTKHDGDIWLQKGWKEFATYYSLDHGHLVLFEYKQTCHFEVHIFDKSTLEIDYPLHVSQDVQYNLDQISDDDSVKILDEIPPCHKTRQKSPMPSPQPCKKSRTGASGDVKRRSTEQNLPQHVQTEGTNFEKSKFSSVKKESDVQGEGINWLDPQRVVDVENTTVVTRKGEKATHCPFTNGALNEANKFASENPFFTININSGVRPHVPRAFIKECLNNKTQIVKLQFGKKLWPVKLLGYPRNNGILSSGWSQFAGESELLGGELCVLELINREDAVLRVHIFRGHC | 343 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Gabi3683g00002 | 343 | Gene3D | - | 235 | 342 | IPR015300 | - | |
Gabi3683g00002 | 343 | MobiDBLite | consensus disorder prediction | 139 | 193 | - | - | |
Gabi3683g00002 | 343 | ProSiteProfiles | B3 DNA-binding domain profile. | 11 | 104 | IPR003340 | GO:0003677 | |
Gabi3683g00002 | 343 | Gene3D | - | 8 | 105 | IPR015300 | - | |
Gabi3683g00002 | 343 | Pfam | B3 DNA binding domain | 262 | 341 | IPR003340 | GO:0003677 | |
Gabi3683g00002 | 343 | Pfam | B3 DNA binding domain | 13 | 103 | IPR003340 | GO:0003677 | |
Gabi3683g00002 | 343 | PANTHER | B3 DOMAIN-CONTAINING | 4 | 337 | - | - | |
Gabi3683g00002 | 343 | SUPERFAMILY | DNA-binding pseudobarrel domain | 6 | 104 | IPR015300 | - | |
Gabi3683g00002 | 343 | SUPERFAMILY | DNA-binding pseudobarrel domain | 246 | 341 | IPR015300 | - | |
Gabi3683g00002 | 343 | ProSiteProfiles | B3 DNA-binding domain profile. | 247 | 342 | IPR003340 | GO:0003677 | |
Gabi3683g00002 | 343 | SMART | B3_2 | 251 | 342 | IPR003340 | GO:0003677 | |
Gabi3683g00002 | 343 | SMART | B3_2 | 12 | 104 | IPR003340 | GO:0003677 | |
Gabi3683g00002 | 343 | CDD | B3_DNA | 255 | 340 | IPR003340 | GO:0003677 | |
Gabi3683g00002 | 343 | CDD | B3_DNA | 11 | 102 | IPR003340 | GO:0003677 | |
Gabi3683g00002 | 343 | MobiDBLite | consensus disorder prediction | 167 | 188 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Gabi3683g00002 | Gabi-Chr3683 | 12915 | 16228 | Dispersed/Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Gabi3683g00002 | 7 | 340 | B3 DNA Binding Superfamily | AT3G18990 | 29.143 | 1.03e-35 | 131 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | B3 | Gabi3683g00002 | B3 | 1.1e-09 | CL0405 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Gabi3683g00002 | - | - | lang:109359484 | 324.324 |