Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3683g00001 ATGAGTAAGCACCCTCACCCCACTCCAATCCTTTTCTTCAAGATTATTCCTGGAACAAGTCTTGCAGATGGAAAGCTTAAGATTCCATACAATTTCGTTAGGAAATATGGTGGTGACATGTCAAACCCAATGTTTCTCAAACCTCCAGATGGCACTGAATGGGAAGTATTTTGGACTAAACATGATGGTGATATTTGGCTTCAAAAGGGTTGGAAAGAATTTGCTACATATTACTCTCTAGATCATGGTCATTTGGTGTTGTTTGAATACAAGCAAACTTGTCATTTTGAGGTACACATATTTGACAAGAGTACCCTTGAAATAGATTATCCTCTGCATGTCTCTCAAGATGTACAGTACAACCTTGACCAGATCAGTGATGATGACTCAGTTAAAATTTTAGATGAGATACCACCATGCCATAAGACTAGACAAAAATCACCAATGCCTTCTCCTCAACCATGTAAAAAATCAAGAACTGGCGCAAGTGGAGATGTTAAGAGAAGATCCACAGAGCAAAACTTGCCTCAGCATGTCCAAACTGAAGGCACAAACTTTGAGAAGTCTAAATTTTCATCTGTAAAGAAAGAATCGGATGAATCAGTTCAAGGAGAGGGAATCAATTGGCTAGACCCTCAGAGAGTTGTGGATGTTGAAAATACAACTGTTGTTACCAGAAAAGGTGAGAAGGCTACTCACTGCCCCTTCACAAATGGAGCACTGAATGAAGCTAATAAATTTGCCTCAGAAAATCCCTTTTTCACAATCAATATTAACTCGGGAGTTAGACCGCATGTACCAAGAGCCTTCATCAAAGAGTGCTTGAATAACAAGACGCAGATTGTGAAGTTACAATTTGGAAAGAAATTGTGGCCTGTAAAGTTGCTTGGTTATCCACGCAACAATGGCATATTGTCTAGTGGTTGGTCCCAATTTGCAGGAGAAAGTGAATTGTTAGGTGGAGAGCTTTGTGTCTTGGAGCTCATCAATAGAGAAGATGCAGTGCTTCGTGTTCATATTTTCAGAGGCCACTGTTAG 1038 0.3988 MSKHPHPTPILFFKIIPGTSLADGKLKIPYNFVRKYGGDMSNPMFLKPPDGTEWEVFWTKHDGDIWLQKGWKEFATYYSLDHGHLVLFEYKQTCHFEVHIFDKSTLEIDYPLHVSQDVQYNLDQISDDDSVKILDEIPPCHKTRQKSPMPSPQPCKKSRTGASGDVKRRSTEQNLPQHVQTEGTNFEKSKFSSVKKESDESVQGEGINWLDPQRVVDVENTTVVTRKGEKATHCPFTNGALNEANKFASENPFFTININSGVRPHVPRAFIKECLNNKTQIVKLQFGKKLWPVKLLGYPRNNGILSSGWSQFAGESELLGGELCVLELINREDAVLRVHIFRGHC 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3683g00001 345 ProSiteProfiles B3 DNA-binding domain profile. 249 344 IPR003340 GO:0003677
Gabi3683g00001 345 MobiDBLite consensus disorder prediction 139 205 - -
Gabi3683g00001 345 ProSiteProfiles B3 DNA-binding domain profile. 11 104 IPR003340 GO:0003677
Gabi3683g00001 345 PANTHER B3 DOMAIN-CONTAINING 4 339 - -
Gabi3683g00001 345 CDD B3_DNA 257 342 IPR003340 GO:0003677
Gabi3683g00001 345 SMART B3_2 253 344 IPR003340 GO:0003677
Gabi3683g00001 345 SMART B3_2 12 104 IPR003340 GO:0003677
Gabi3683g00001 345 SUPERFAMILY DNA-binding pseudobarrel domain 248 343 IPR015300 -
Gabi3683g00001 345 Gene3D - 8 105 IPR015300 -
Gabi3683g00001 345 Pfam B3 DNA binding domain 264 343 IPR003340 GO:0003677
Gabi3683g00001 345 Pfam B3 DNA binding domain 13 103 IPR003340 GO:0003677
Gabi3683g00001 345 Gene3D - 237 344 IPR015300 -
Gabi3683g00001 345 SUPERFAMILY DNA-binding pseudobarrel domain 6 104 IPR015300 -
Gabi3683g00001 345 CDD B3_DNA 11 102 IPR003340 GO:0003677
Gabi3683g00001 345 MobiDBLite consensus disorder prediction 167 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3683g00001 Gabi-Chr3683 12915 16228 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3683g00001 7 342 B3 DNA Binding Superfamily AT3G18990 26.724 1.89e-35 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Gabi3683g00001 B3 1.1e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3683g00001 - - lang:109359484 328.946