Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3681g00029 ATGGAATTCGAGAAGCAAGATGTTGAGATGGAAGTGGAGGGAGCGAGTGATGACTCAGTGGTCAACCCATCACGTGTGAAAATGCCGAATGCAGGTGAAGAACCAATCATGCTGGCTCAGCCCGTGATCAGAAACAGTGGCAAGGGAAGGTACTGGGAGTGTCTCAAGAACCACGCTGTGGGGATTGGAGGCCACGCGCTTGACGGTTGCGGCGAGTTCATGGCTGCCGGTGCTGATGGCACACTCGACGCGCTCAGGTGCGTCGCGTGCAACTGCCACCGTAACTTTCACAGAAAGGAGACCGAAATTATCCCCGGAGAGCCGTTTTTATCCCGCCGCTACCAACAGCCGCCATTCGCGGCGTGGACCCCGGCGGGGTACATGCCGGTTGCGGGACAGCAGAGAGGGGCGGCGACACTGGTGCTGCCGTCGGCTGGTGGTGGTGGTGGGACCCAGACCTCGAGGGATGATCAAGAAGATGCTTCGGAGCCACGTGGTGGTGGGTCGAAGAAGAGGTTCAGGACCAAGTTCACTCAGGAACAGAAGGACAAGATGCTGTGCTTTGCTGAGAAATTGGGTTGGAGAATTCAGAAGCAAGACGAGAATGTGGTGGAAGAGTTCTGTAACGAGATTGGGGTGAAGCGTCAAGTGTTCAAGGTTTGGATGCATAACAACAAGCACACTCTTGGAAAGAAGACCTAG 702 0.5556 MEFEKQDVEMEVEGASDDSVVNPSRVKMPNAGEEPIMLAQPVIRNSGKGRYWECLKNHAVGIGGHALDGCGEFMAAGADGTLDALRCVACNCHRNFHRKETEIIPGEPFLSRRYQQPPFAAWTPAGYMPVAGQQRGAATLVLPSAGGGGGTQTSRDDQEDASEPRGGGSKKRFRTKFTQEQKDKMLCFAEKLGWRIQKQDENVVEEFCNEIGVKRQVFKVWMHNNKHTLGKKT 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3681g00029 233 Gene3D - 154 231 - -
Gabi3681g00029 233 MobiDBLite consensus disorder prediction 140 175 - -
Gabi3681g00029 233 MobiDBLite consensus disorder prediction 156 175 - -
Gabi3681g00029 233 SUPERFAMILY Homeodomain-like 163 231 IPR009057 -
Gabi3681g00029 233 Pfam ZF-HD protein dimerisation region 50 101 IPR006456 -
Gabi3681g00029 233 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 51 100 IPR006456 -
Gabi3681g00029 233 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 35 229 - -
Gabi3681g00029 233 FunFam Zinc-finger homeodomain protein 2 157 231 - -
Gabi3681g00029 233 NCBIfam homeobox domain, ZF-HD class 170 226 IPR006455 -
Gabi3681g00029 233 MobiDBLite consensus disorder prediction 1 24 - -
Gabi3681g00029 233 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 50 100 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3681g00029 Gabi-Chr3681 547752 548453 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3681g00029 1 229 ZF-HD Transcription Factor Family AT4G24660 49.145 1.11e-66 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Gabi3681g00029 ZF-HD_dimer 2.3e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3681g00029 - - qsa:O6P43_025228 286.574