Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Gabi3681g00027 | ATGGAAGAGAGCATTGACCCTGCAACCTCAAGCCTTCTGTGTCTGGAAAACGAAAACATATGCTTTGATGATTTGGAATGCAGTGCCGCAGATGGGTCTCCTTACTGGGACCACAAAAATGTTAACTTTAACAATCAATGTCTGAGTAATGACAACCTTGGATCGGAACCTATGGTGGGTTTTCTCGTACCGAGTGATGAAACTGTTGAGCTTTTGGTTGAGAGGGAGAGAGAACATTTGCCCCGAGATGATTACCTGAAGAGGCTGCGTAATGGGGACTTGAACTTGAGTGTTCGGAGGGATGCTGTTGATTGGATTTGGAAGGCTCATGAATATTTTGGTTTTGGACCCTGTAGCTTTTTTCTAGCTGTGAACTACTTGGATCGGTTCATATCAGTATATGAATTGCAAAAGAAAGACATAGGTTGGAGTATGCAATTGTTAGCTGTAGCATGTTTGTTAATTGCTGCTAAAGTGGAGGAGTGGAAAGTGCCTAAAGCTGTAGATTTTCAGGAAGCTGTTGGAGAACCAAATTTTGTATTCGAAGCTAAAACCATTAAGAGAATGGAACTACATGTATTAAACACATTGGGATGGAAAATGCAAGCTTTAACTCCATTTTCCTTCCTAGACTACTTCCTTAGCAAGATCACTTGTGAGCAGCATCCAGCAAAGTCATTCATTTTAAGATCAGTAGAGCTCGTGCTTAACATAATTAGATGTATTGATTTCTTGGAATTTAGGCCTTCTGAAATTGCTGCAGCAGTGGCAATTTCTGTTTCAAGGGAATTGCAAGCAGGAGAGACTGATAAGGCCTTAAATTGTTTGGCCATTGTAAAGAAGGAGAGAATTTTGAAGTGTCTTGAACTGATAAGAGATTTGAACTTGATCAAAGTTTCTGGTAATTTGCAAAGCACCTTAGCACGATTTGTACCCCAAAGCCCTGTTGGGGTGTTGGATGCTGCATGCTTGAGCTCTAGAAGTGATGAAGTAATGGTTGGATCATGTACAAATTCTTCCCATAATAGTCGAAATATTAAGAAGATCAAATCAGATGGAGCTTCTGATGGGACTTTCAAGCCATGA | 1086 | 0.4052 | MEESIDPATSSLLCLENENICFDDLECSAADGSPYWDHKNVNFNNQCLSNDNLGSEPMVGFLVPSDETVELLVEREREHLPRDDYLKRLRNGDLNLSVRRDAVDWIWKAHEYFGFGPCSFFLAVNYLDRFISVYELQKKDIGWSMQLLAVACLLIAAKVEEWKVPKAVDFQEAVGEPNFVFEAKTIKRMELHVLNTLGWKMQALTPFSFLDYFLSKITCEQHPAKSFILRSVELVLNIIRCIDFLEFRPSEIAAAVAISVSRELQAGETDKALNCLAIVKKERILKCLELIRDLNLIKVSGNLQSTLARFVPQSPVGVLDAACLSSRSDEVMVGSCTNSSHNSRNIKKIKSDGASDGTFKP | 361 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Gabi3681g00027 | 361 | SMART | cyclin_7 | 104 | 195 | IPR013763 | - | |
| Gabi3681g00027 | 361 | Pfam | Cyclin, C-terminal domain | 205 | 295 | IPR004367 | - | |
| Gabi3681g00027 | 361 | CDD | CYCLIN_AtCycD-like_rpt1 | 98 | 199 | - | - | |
| Gabi3681g00027 | 361 | SMART | Cyclin_C_2 | 204 | 328 | IPR004367 | - | |
| Gabi3681g00027 | 361 | SUPERFAMILY | Cyclin-like | 64 | 201 | IPR036915 | - | |
| Gabi3681g00027 | 361 | CDD | CYCLIN_AtCycD-like_rpt2 | 205 | 291 | - | - | |
| Gabi3681g00027 | 361 | ProSitePatterns | Cyclins signature. | 99 | 130 | IPR006671 | - | |
| Gabi3681g00027 | 361 | PANTHER | CYCLINS | 68 | 292 | IPR039361 | - | |
| Gabi3681g00027 | 361 | Gene3D | - | 82 | 202 | - | - | |
| Gabi3681g00027 | 361 | Pfam | Cyclin, N-terminal domain | 69 | 201 | IPR006671 | - | |
| Gabi3681g00027 | 361 | Gene3D | - | 72 | 289 | - | - | |
| Gabi3681g00027 | 361 | FunFam | D6-type cyclin | 201 | 289 | - | - | |
| Gabi3681g00027 | 361 | FunFam | D6-type cyclin | 82 | 200 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Gabi3681g00027 | Gabi-Chr3681 | 482049 | 484211 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Gabi3681g00027 | 55 | 272 | Core Cell Cycle Gene Families | AT5G65420 | 55.204 | 1.76e-78 | 240 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Gabi3681g00027 | K18810 | - | gmx:100800570 | 428.328 |