Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3681g00025 ATGGTGAGAACCCCTTCCTGTGACAAAAATGGACTTAGGAAAGGTACTTGGACTCCTGAGGAAGATAGAATGTTAATTGCTTATGTCACTAGATATGGCTGTTGGAATTGGCGCCAACTCCCCAGGTTTGCAGGTCTTGCAAGGTGTGGGAAAAGTTGCAGACTGAGGTGGATGAATTATCTTAGGCCTAATCTCAAAAGAGGGAACTTCACTCATGAAGAAGAAGAGTACATAATCAGAATGCATAAAAGGCTTGGTAATAGATGGTCTGCTATTGCGGCTGAGTTACCAGGAAGAACAGATAACGAAATAAAGAACCATTGGCATACAACCCTCAAGAAGCGCTTCGAGGAGAGCACAATCACAAATGAAAAAGAAGCCAAAGCCTCAAAATCAAAAGATAATGAAGCCAAGCCAGGGAGAGACTCATTGACCAAAAATGATGTTACTGTTTTACAAGTTACTCCTCCAAGTACTTCCCAGATCTCAGATTTTAGTGACTCAATATCCCCACTATCTTCCTCCAGCGAATTCTCTTCCACAACTTCACATCACACCACAGCTGCTAGTAAAGAAAAGTTGGTTCTCGAAGATGAATTCGGTTTTCTTGATGCATACACAGAGACTGTGAATGGAAATTTCTGGACAGAGCCATATTTTTTAGATTCTGACATTTCCTACACTCCAAGTATTATAGTACCTAATAATGATGCTTTTCAAAGTTCAGATACTACCCAGATCCTTAATGCTTGTGCATTGTCTCCACATCAATCGTCAAGTGAAAGTTTGGTTTTGGACAATGACTTATGCAGCTTTCTCGATGCAAACGCAGAATCAGCAATTGATAATTTTTGGACACTACCATATGTGACTGAGGTGTCCCACGTTCCAAGCGAACTATTGATTCCCTTGGCGGCCGAATCCGAATATTCTTCTCCAGTGTATGATGCTGATCTCTGGAGTCAAAGTAATTTGTATGATGAACATCTTAGCTTATTCTAA 1002 0.4072 MVRTPSCDKNGLRKGTWTPEEDRMLIAYVTRYGCWNWRQLPRFAGLARCGKSCRLRWMNYLRPNLKRGNFTHEEEEYIIRMHKRLGNRWSAIAAELPGRTDNEIKNHWHTTLKKRFEESTITNEKEAKASKSKDNEAKPGRDSLTKNDVTVLQVTPPSTSQISDFSDSISPLSSSSEFSSTTSHHTTAASKEKLVLEDEFGFLDAYTETVNGNFWTEPYFLDSDISYTPSIIVPNNDAFQSSDTTQILNACALSPHQSSSESLVLDNDLCSFLDANAESAIDNFWTLPYVTEVSHVPSELLIPLAAESEYSSPVYDADLWSQSNLYDEHLSLF 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3681g00025 333 CDD SANT 69 112 IPR001005 -
Gabi3681g00025 333 MobiDBLite consensus disorder prediction 119 168 - -
Gabi3681g00025 333 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Gabi3681g00025 333 CDD SANT 16 61 IPR001005 -
Gabi3681g00025 333 MobiDBLite consensus disorder prediction 119 143 - -
Gabi3681g00025 333 MobiDBLite consensus disorder prediction 146 168 - -
Gabi3681g00025 333 Gene3D - 14 66 - -
Gabi3681g00025 333 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Gabi3681g00025 333 Gene3D - 68 142 - -
Gabi3681g00025 333 FunFam MYB-related transcription factor 13 66 - -
Gabi3681g00025 333 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Gabi3681g00025 333 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Gabi3681g00025 333 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Gabi3681g00025 333 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 234 - -
Gabi3681g00025 333 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Gabi3681g00025 333 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Gabi3681g00025 333 SMART sant 13 63 IPR001005 -
Gabi3681g00025 333 SMART sant 66 114 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3681g00025 Gabi-Chr3681 393627 394903 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3681g00025 1 226 MYB Transcription Factor Family AT1G06180 45.133 1.02e-58 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gabi3681g00025 Myb_DNA-binding 7.5e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3681g00025 K09422 - gmx:100777107 374.785