Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3681g00024 ATGGTAAGAGCTCCTTCCTATGATAAAAATGGAATCAAGAAAGGGGCATGGAGTAAAGAAGAGGACGAGAGGTTAAGAGCTTATATTCAGAGATATGGTCATTTTAATTGGCGTCAACTCCCCAAGTTCGCAGGTTTAGCAAGGTGTGGGAAAAGTTGCAGACTTCGTTGGTTGAATTACTTGAGGCCAGATCTAAAACATGGGAACTACACCCAAGAGGAAGTTGAATTAATCATGAAATTACACCAACAACTTGGAAATAAATGGTCCCAGATTGCTGAAAAACTGCCTGGGAGAACGGACAATGAGGTAAAGAACTATTGGCATAGCCACCTAAAAAAGTGCTTGAAGAGCAAAGAGAACACAACATGTGAGTTGAAGTCGAAGCCAGGTAATAGTCTTGAAGGAAATGCGACTTGTAAGTTTGTAAGATCTGAAAGCCCAGATGCTGATGTTGGTGATGATTTTCATAACATTTTCGAAAGCTCATTGCCCATGTCGACAGAAACTTCAGAAGGAGACAACGATTCCCTTACCTCTAATGTTGCACAATCAACCATGAACTGCTCCAGAGGAAAAGAAGATTTTAGTGTTGCTCCATGGGTAACATTCGAAGAATTTAGCGGCGATTTTTGGACTGAACCATTCGTCGCAGAAAATACATATACTGATGAGATATGTAGTGGTGAAAGCGGAGCCTTCTTGATACCAAATTTCTACGACGGTGCATATTTGTTGTAG 741 0.4089 MVRAPSYDKNGIKKGAWSKEEDERLRAYIQRYGHFNWRQLPKFAGLARCGKSCRLRWLNYLRPDLKHGNYTQEEVELIMKLHQQLGNKWSQIAEKLPGRTDNEVKNYWHSHLKKCLKSKENTTCELKSKPGNSLEGNATCKFVRSESPDADVGDDFHNIFESSLPMSTETSEGDNDSLTSNVAQSTMNCSRGKEDFSVAPWVTFEEFSGDFWTEPFVAENTYTDEICSGESGAFLIPNFYDGAYLL 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3681g00024 246 FunFam MYB-related transcription factor 13 66 - -
Gabi3681g00024 246 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Gabi3681g00024 246 CDD SANT 69 112 IPR001005 -
Gabi3681g00024 246 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Gabi3681g00024 246 CDD SANT 16 61 IPR001005 -
Gabi3681g00024 246 Gene3D - 68 135 - -
Gabi3681g00024 246 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Gabi3681g00024 246 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Gabi3681g00024 246 SMART sant 66 114 IPR001005 -
Gabi3681g00024 246 SMART sant 13 63 IPR001005 -
Gabi3681g00024 246 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 178 - -
Gabi3681g00024 246 Gene3D - 6 67 - -
Gabi3681g00024 246 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Gabi3681g00024 246 Pfam Myb-like DNA-binding domain 68 112 IPR001005 -
Gabi3681g00024 246 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3681g00024 Gabi-Chr3681 371622 373899 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3681g00024 1 131 MYB Transcription Factor Family AT2G31180 60.305 2.59e-54 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gabi3681g00024 Myb_DNA-binding 7.5e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3681g00024 K09422 - gmx:100781032 260.766