Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3681g00023 ATGGTGAGAGCTCCTTATTTTGATAAAAATGGAATAAAGAGAGGTGCATGGAGTGATGAAGAGGATAAGAGGCTTATATCTTACATTGAGAGACAAGGCCATCCTAATTGGCGTCAACTCCCAAAGTTTGCAGGTTTGGCAAGATGTGGAAAGAGTTGCAGACTTCGTTGGATGAATTACCTGAGGCCAAATCTAAAACGAGGAAACTATACACAGAAGGAAGAGCAAACAATCACGGATTTGCATAAAAAACATGGAAACAAATGGTCTCTGATTGCTGAAAATCTACCTGGAAGAACAGACAATGAAATAAAGAACTATTGGCACAGCCACCTAAAGAAGTTCTCACAAACCAATGAGATCACAACATGTGATGATGAGTTTGAGTCCAACCCAACTCAGAGTACAGAATTTGAAAGGCCAACAAACGATGCTGTTAGTGCTGATTCTCCACACATTTTGGAAAGTTCATTGTCCATGTCCTCGGAAACTTCATACAACGAAGACAATTCACCTTCCTTTTCCTCTAGTCATATAGAATCAACCGTGAACTTGTCGAGGGAAGAAGATAGTGTTGCTTTATGGGAAACGTTCGGTGGACTCAGTAGCAATTTTTGGACAGAACCATTTATTTCAGAAAACGCATTCAGTCAGGATTACTTTCCCATTTCATGCTGTGGAGAAGAGATGGATGAACCATTTTTCATATGGTAG 714 0.4006 MVRAPYFDKNGIKRGAWSDEEDKRLISYIERQGHPNWRQLPKFAGLARCGKSCRLRWMNYLRPNLKRGNYTQKEEQTITDLHKKHGNKWSLIAENLPGRTDNEIKNYWHSHLKKFSQTNEITTCDDEFESNPTQSTEFERPTNDAVSADSPHILESSLSMSSETSYNEDNSPSFSSSHIESTVNLSREEDSVALWETFGGLSSNFWTEPFISENAFSQDYFPISCCGEEMDEPFFIW 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3681g00023 237 MobiDBLite consensus disorder prediction 123 177 - -
Gabi3681g00023 237 CDD SANT 69 112 IPR001005 -
Gabi3681g00023 237 CDD SANT 16 61 IPR001005 -
Gabi3681g00023 237 Gene3D - 69 114 - -
Gabi3681g00023 237 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Gabi3681g00023 237 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Gabi3681g00023 237 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Gabi3681g00023 237 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Gabi3681g00023 237 FunFam MYB-related transcription factor 13 66 - -
Gabi3681g00023 237 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Gabi3681g00023 237 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Gabi3681g00023 237 SMART sant 13 63 IPR001005 -
Gabi3681g00023 237 SMART sant 66 114 IPR001005 -
Gabi3681g00023 237 Gene3D - 14 66 - -
Gabi3681g00023 237 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Gabi3681g00023 237 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3681g00023 Gabi-Chr3681 339027 340079 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3681g00023 1 198 MYB Transcription Factor Family AT2G31180 45.673 2.59e-55 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gabi3681g00023 Myb_DNA-binding 4.7e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3681g00023 K09422 - gmx:100781032 384.8