Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3681g00003 ATGGCATACTCAGAATTACAATCAGAAGCTGAACATCCTCGTATTGATGCTAATGAGCCTCAAAAAAAGAAAGTGGTGGTTCTTGGCACAGGATGGGCTGCTACCAGTCTCCTTAAGGGTCTGGATGCTTCATTATATGATGTTCAGGTTGTTTCGCCTCGAAACTACTTTGCATTTACTCCCTTATTACCCAGTGTCACTTGTGGAACAGTTGAAGCACGAAGCATTGTAGAGCCAGTCCGAAACATCATTAAAAAGAGAAAAGGAGAAATAAAATTTTGGGAGGCAGAATGTGTCAAGATTGATGCTGCAAACAAAAAGGTTTTTTGTCAATCCAATATTGAAAACTTAGTGGGAAGTGGTGAATTTTCTTTGGACTATGACTTCTTGGTTGTAGCAGTAGGAGCACAAGTGAATACTTTTAACACCCCTGGTGTCAAGGAGAATTGTCATTTTCTGAAGGATGTTGAGGATGCTCAGAAGATCCGTCTGTCTGTGATAGATTGTTTTGAAAAGGCTGTTCTTCCTAGTTTATCTGAAGAAGAGCGAAGGTCAAATCTTCATTTTGTAGTTGTTGGAGGAGGCCCAACTGGTGTGGAATTTGCTGCAGAGCTGCATGATTATGTCCAAGAAGATTTAATTAAATTATATCCAACTGTTAAAGATTTAGTGAAGATAACATTGATTCAATCAGGAGATCACATCTTGAACATGTTTGACGAAAGAATAAGTTCATTTGCTGAGCAGAAGTTTTTGAGAGATGGTATAAAAGTTCAGACTGGATGCCGGGTTGTCAATGTTGGGGACAAGGAAATTACAGTGAAGGTGAAATCAACAGGAGAGGATTGCTCTGTGCCCCATGGATTGATTGTGTGGTCCACAGGCATTTCAACTATTCCAGTTATAAGGGACTTTATGGAAGAAATTGGTCAGGCTAAAAGGCATGTACTAGCAACTGATGAATGGTTGCGAGTGAAGGGATGCAAAGATGTGTATGCTATTGGTGATTGTTCTACAATAAATCAACGTAAAATCATGGATGATATCCTAGCCGTATTTGAGGCTGCAGACAAAGATCACTCTGGTACCTTAACTGTTGAAGAATTCCAGGATGTGATGGATGACATCCTCTTAAGATATCCACAAGTCCAACTATATCTAAAGAGGAAAAATCTGCTTGATTTCCACACTCTGTGGAAAGATTCACAGGGGAATGAAAAAAAGGAAATAGACATAGAAGGGCTTAAGCTGGCCCTTTCTCATGTAGATTCTCAGATGAAGAATCTGCCAGCAACTGCACAGGTTGCTGCCCAAGAGGGTGAATATCTAGCAAGATGCTTTAACCGCATGGATCATTGTGAAGAGCATCCTGAAGGTCCTCGACGATTTAGAGGATCTGGACGTCATAAGTTTCTTCCCTTCCGGTATAAGCATTTTGGGCAATTTGCTCCACTGGGTGGGGAACAGGCAGCAGCAGAACTTCCTGGAGACTGGGTTTCCATTGGTCACAGCACTCAATGGCTTTGGTATTCTGTATATGCAAGCAAGCAAGTGAGCTGGCGCACAAGGTACTTGGTCCTGTCTGATTGGACAAGAAGATTCATATTTGGGAGGGATTCAAGTCGAGTTTAA 1632 0.4142 MAYSELQSEAEHPRIDANEPQKKKVVVLGTGWAATSLLKGLDASLYDVQVVSPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIIKKRKGEIKFWEAECVKIDAANKKVFCQSNIENLVGSGEFSLDYDFLVVAVGAQVNTFNTPGVKENCHFLKDVEDAQKIRLSVIDCFEKAVLPSLSEEERRSNLHFVVVGGGPTGVEFAAELHDYVQEDLIKLYPTVKDLVKITLIQSGDHILNMFDERISSFAEQKFLRDGIKVQTGCRVVNVGDKEITVKVKSTGEDCSVPHGLIVWSTGISTIPVIRDFMEEIGQAKRHVLATDEWLRVKGCKDVYAIGDCSTINQRKIMDDILAVFEAADKDHSGTLTVEEFQDVMDDILLRYPQVQLYLKRKNLLDFHTLWKDSQGNEKKEIDIEGLKLALSHVDSQMKNLPATAQVAAQEGEYLARCFNRMDHCEEHPEGPRRFRGSGRHKFLPFRYKHFGQFAPLGGEQAAAELPGDWVSIGHSTQWLWYSVYASKQVSWRTRYLVLSDWTRRFIFGRDSSRV 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3681g00003 543 PRINTS FAD-dependent pyridine nucleotide reductase signature 188 206 - -
Gabi3681g00003 543 PRINTS FAD-dependent pyridine nucleotide reductase signature 127 145 - -
Gabi3681g00003 543 SMART efh_1 348 376 IPR002048 GO:0005509
Gabi3681g00003 543 ProSiteProfiles EF-hand calcium-binding domain profile. 344 379 IPR002048 GO:0005509
Gabi3681g00003 543 SUPERFAMILY FAD/NAD(P)-binding domain 22 240 IPR036188 -
Gabi3681g00003 543 Pfam Pyridine nucleotide-disulphide oxidoreductase 23 345 IPR023753 GO:0016491
Gabi3681g00003 543 ProSitePatterns EF-hand calcium-binding domain. 357 369 IPR018247 -
Gabi3681g00003 543 FunFam External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial 390 542 - -
Gabi3681g00003 543 FunFam External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial 14 373 - -
Gabi3681g00003 543 SUPERFAMILY FAD/NAD(P)-binding domain 187 341 IPR036188 -
Gabi3681g00003 543 PANTHER NADH DEHYDROGENASE 17 543 IPR045024 GO:0003954|GO:0006116
Gabi3681g00003 543 Gene3D - 13 377 - -
Gabi3681g00003 543 Gene3D - 405 543 - -
Gabi3681g00003 543 SUPERFAMILY EF-hand 302 429 IPR011992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3681g00003 Gabi-Chr3681 11623 17490 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3681g00003 1 543 Chloroplast and Mitochondria Gene Families AT4G21490 65.511 0.0 731
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3681g00003 K03885 - gmx:100793566 978.393