Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3679g00006 ATGACTATGCTAGCGTTGGTAATGTTGCTGCTTATGAATCTTGGGGATGCTCAGAATGGACCCTCCATTCCGTGTCCCTTCCGTGTATCTTGTACACAAAACAATAAGATGCTTGAGATTCCTGTAGTTCGAGTCCCAGTAAAACTGGTTGTCAGTCATATTGATTACAGATTGCAAACATTAGAAGCGTATGACCCTGAAAACTGTCTTCCAGAACTCTTTCTTAGACTGAACTATTCGTCATTTTTACCTTTCTTCAAATTTGTAGAACCATACAATATTAGTTTCTTCAATTGTTCTTCAGTAGGGCAACGGCATCTGAGAAACATGTACCAAATAGAAGAAGATGCGCAAGATATGTTATCTTGTCCGATTTATATGGCTTACTCTGAGCAAAGTATCGTTGATTTGGACCTAATATCCTGCACAAAACTATTTGACCAAGTTTTTCCATTCTCCCCATTTGCGATCATGAGAAACTCTTTCTCATTGGTATGGTCCGAAACAAATTTTGACAGTAGATGCTTTGAATGCACGCAAAAATCAAAGAAGCCAACATCCATTTTTTTGACAGCCGCAGGTGTAATCATAGGTTCAATTATGCTGGCGGTCGTGCTCCGTGCCTTCTTTCGAATATATTGCTATTTTAGGATGAAAGGGGAAGATCACGCAAGAGTTGAAAACTTTTTGAAGGATTACAGGGCTTTAAAGCCAACCAGATTCTCTTATGCTGATATCAAGAGAATTACGCATCAATTTAAGGACAAGTTAGGTGAAGGAGCTCATGGAGCTGTCTACAAAGGTAAATTATCAAGTCAAATTCTGGTGGCTGTGAAGATCCTCAATAGCACTGAGGGAGATGGAAAAGAGTTCATAAATGAAGTGGGAACAATGGGCAAAATCCACCATGTTAATGTTGTTCGCTTGCTTGGCTTCTGTGCAGATGGATCTCATCGTGCTTTAGTTTATGACTTTTTCCCAAACGGTTCACTGCAGAAATTCATCTCTCCACAGGACAGCAAGGACTCCTTCCTTGGATGGGACAAGTTGCAACAAATTGCTGTTGGAATAGCCAAAGGAATTGAGTATCTTCATCAGGGTTGTGATCATAGAATTCTTCACTTTGACATCAATCCCCATAACATCTTGCTAGATGACACCTTCACTCCAAAAATTTCAGACTTTGGTTTAGCTAAGCTGTGCTCAAAAAATAGAAGTACTGTATCCATGACTGCAGCCAGGGGAACATTAGGGTACATGGCACCTGAAGTTTTTTCTAGAAACTTTGGCAATGTATCTTATAAGTCTGATATCTATAGTTATGGGATGTTGCTGTTAGAGATGGTTGGAGGAAGAAAGAATGTAAACACAGGTCAAGATACTTTCCAAGTTCTATATCCAGATTGGATACATAGTTTGCTTGAAGGAGGAGACGTGCATATCCCAATTGATGAAGAGGGAGATTTTGAAATTGCAAAAAAACTTGCAATAGTGGGACTTTGGTGCATCCAGTGGCACCCTGTGCAACGCCCTTCCATGAAAACTGTCATGCAGATGCTCCAAGGAGAAGGAGACAAGTTAAAGGTGCCCCCAAGTCCTTTCGATTCTACAGCTTCCACTAATACAAGTACCAATATTGCTGCAAGACCTCTGAATTTGGAGCTGGAAGTTATTCAAGAATTAGATTAG 1689 0.402 MTMLALVMLLLMNLGDAQNGPSIPCPFRVSCTQNNKMLEIPVVRVPVKLVVSHIDYRLQTLEAYDPENCLPELFLRLNYSSFLPFFKFVEPYNISFFNCSSVGQRHLRNMYQIEEDAQDMLSCPIYMAYSEQSIVDLDLISCTKLFDQVFPFSPFAIMRNSFSLVWSETNFDSRCFECTQKSKKPTSIFLTAAGVIIGSIMLAVVLRAFFRIYCYFRMKGEDHARVENFLKDYRALKPTRFSYADIKRITHQFKDKLGEGAHGAVYKGKLSSQILVAVKILNSTEGDGKEFINEVGTMGKIHHVNVVRLLGFCADGSHRALVYDFFPNGSLQKFISPQDSKDSFLGWDKLQQIAVGIAKGIEYLHQGCDHRILHFDINPHNILLDDTFTPKISDFGLAKLCSKNRSTVSMTAARGTLGYMAPEVFSRNFGNVSYKSDIYSYGMLLLEMVGGRKNVNTGQDTFQVLYPDWIHSLLEGGDVHIPIDEEGDFEIAKKLAIVGLWCIQWHPVQRPSMKTVMQMLQGEGDKLKVPPSPFDSTASTNTSTNIAARPLNLELEVIQELD 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3679g00006 562 SUPERFAMILY Protein kinase-like (PK-like) 234 520 IPR011009 -
Gabi3679g00006 562 PANTHER RUST RESISTANCE KINASE LR10-RELATED 222 539 IPR045874 GO:0004672
Gabi3679g00006 562 Pfam Protein kinase domain 253 518 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3679g00006 562 Gene3D Transferase(Phosphotransferase) domain 1 326 529 - -
Gabi3679g00006 562 ProSitePatterns Protein kinases ATP-binding region signature. 257 279 IPR017441 GO:0005524
Gabi3679g00006 562 FunFam PR5-like receptor kinase 326 532 - -
Gabi3679g00006 562 Gene3D Phosphorylase Kinase; domain 1 226 325 - -
Gabi3679g00006 562 ProSiteProfiles Protein kinase domain profile. 251 535 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3679g00006 562 CDD STKc_IRAK 257 522 - -
Gabi3679g00006 562 FunFam serine/threonine-protein kinase PBS1-like 219 325 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3679g00006 Gabi-Chr3679 46411 48393 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3679g00006 194 533 Receptor kinase-like Gene Family AT1G66910 47.126 5.24e-104 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Gabi3679g00006 Pkinase 2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3679g00006 - - tpra:123893290 773.081