Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3679g00005 ATGTGCAGAGAGAAATCCTTCTCAAGCTATGAGGGATTACTGTTACGCTTCCTCCAAATTACAGTTATACTACTCCAACAAACTTGTGCTGCAAATAATAACCACACATGTGCCCCATCATCCTGCGGCAAAATCACAAACATAAGACATCCATTTCGACTGAAGCATGACCCAGCAAACTGCGGGGACCCGAGGTACGAGCTAGCTTGCGAAAACAACGTCACAGTGTTGACTTTGTTTTCGGGTAAATACTATGTGGAAGCAATCAACTACAAAAATTTCACAATCCGGCTTGTTGATCCTGGTATTCAAGAGTCTGATAATTGCTCCTCCATTCCTCGCTATTTCTTATCCGCATCCAATTTCACTGATTCTTACAATTACGGTGGTTTGTATAATAGTTACTACACGGATCCATATCAAGCCACTCAAATGAGAGAAGGGATGCAAACTTTCATTCAATTCCTGCACGTAATTTACTTGAACTGTAGCAATCCAGTGAGGGATGATGTTCAATATGTGGATACAGGTCCGTGTGTCAAGTGGCATTCCAAAGGCCATGTTTATACTATCGCTGGGGACTTGTCGGCTGGGAACTTGAAAGCTGATTGCCATGTGAAGTTGATTGCTGCAACATCAGTTTTTGGTTCGAGATATATTACTGGTTCGAATTTGGGTATATACAACCAAACCTTTTCCTATGATGAAATTCATGAGATGCTAGTTTATGGATTTGATGTTTCGTGGATGGGTCGTCCTTGTGAAGATCTTTGTGGAAAGCGAGCTTGCTACTTAAATGAAACAACTGAGAGTCCTGGATGCGAATACTGGTCTGATTACTGTGCTACTCCATTGGGATTTGAGGTCAGATGTGGAACTCTATCAAAGCAGCGCATATTTGTGGAAGATATTATATATGGCATTGCTAAAGGAGTATTACAAGTAATAGGTTGGAAAACAAACAGTGCATCCAGAGGCTTTTCCGATTCTAAACTTGGTATTGAGATAGGAAGATATACGGGAAGGTATGTCTTGTCATCATACATTGCAATAAAAATTGTGTTGGGCCTCATAGTTTTCTTTGCGCTATTGATATATACATGTCGAAGAAGACATGCATCAATATATGAAATTATAGAAGATTTTTTGCGAGGAAATACCCTCATGCCAATAAGGTATTCATACAAAGAGATAAAGAAGATGACTAGAGGTTTCAAGTACAAGCTTGGTGAAGGAGGCTATGGCTCTGTTTATCAAGGAAAGTTACGCAGTGGGCCCTTTGTTGCCATAAAGATGTTGGGTAAACCTAAGGCTAATGCGCAAGATTTCATAAGTGAAGTCGCAACCATAGGAAGAATACATCATGCCAATGTGGTGCGACTTATTGGATTTTGTTTTGAAGCATCAAAACGTGCTCTTGTTTATGAATATATGCCCAATGGCTCTCTTGATAAATATATTTTGTCCAAAGAGAATGATATCTCTTTAACTTATGAGCAAATGTACGATATATCTCTAGGAGTGGCTCGTGGTATTGCTTATCTACATCAAGGCTGTGACATGCAAATTTTGCATTTTGATATCAAGCCCCATAACATCCTTCTTGACGACAACTTTATCCCTAAGGTTTCAGACTTTGGTCTTGCAAAGCTTTATCCTATTGACCATAGCATCGTCACTTTGACTGCAGCGAGAGGAACAATTGGATATATGGCTCCTGAATTATTCTACCAGAACATTGGAGGAGTATCCTACAAGGCTGATGTCTACAGCTTTGGAATGCTTTTGATGGAATTGGCAAACAGGAGAAGAAACTTGAATCGACATGCAGATCATTCAAGCCAACTTTTCTTTCCCTCTTGGATTTACAATCAATTGATTGAAGAAAGGGAGATAGAAACGAAAGAAGTTTCCAATGAGGAAAAGAATAATGTGAAGAAGATGTTCTTAATTGCACTATGGTGTATACAGTTGAAACCCACTGATCGTCCTTCAATGAACAAAGTAATAGAGATGCTCGAAGGAGATACTGAGAGCATTGAAATGCCTCCAAAGCCTTCTTTTTATCCAACTGAAATGATTCAAGGAGATCTCGAAATCAACTCTGACCAAACTCTATCAGATGATGATGCTACCTCTACTAGTATTTTTGAAGAAACAATAGTCGGTCCTTTATTGAAGTATTCTGCTTAA 2193 0.3926 MCREKSFSSYEGLLLRFLQITVILLQQTCAANNNHTCAPSSCGKITNIRHPFRLKHDPANCGDPRYELACENNVTVLTLFSGKYYVEAINYKNFTIRLVDPGIQESDNCSSIPRYFLSASNFTDSYNYGGLYNSYYTDPYQATQMREGMQTFIQFLHVIYLNCSNPVRDDVQYVDTGPCVKWHSKGHVYTIAGDLSAGNLKADCHVKLIAATSVFGSRYITGSNLGIYNQTFSYDEIHEMLVYGFDVSWMGRPCEDLCGKRACYLNETTESPGCEYWSDYCATPLGFEVRCGTLSKQRIFVEDIIYGIAKGVLQVIGWKTNSASRGFSDSKLGIEIGRYTGRYVLSSYIAIKIVLGLIVFFALLIYTCRRRHASIYEIIEDFLRGNTLMPIRYSYKEIKKMTRGFKYKLGEGGYGSVYQGKLRSGPFVAIKMLGKPKANAQDFISEVATIGRIHHANVVRLIGFCFEASKRALVYEYMPNGSLDKYILSKENDISLTYEQMYDISLGVARGIAYLHQGCDMQILHFDIKPHNILLDDNFIPKVSDFGLAKLYPIDHSIVTLTAARGTIGYMAPELFYQNIGGVSYKADVYSFGMLLMELANRRRNLNRHADHSSQLFFPSWIYNQLIEEREIETKEVSNEEKNNVKKMFLIALWCIQLKPTDRPSMNKVIEMLEGDTESIEMPPKPSFYPTEMIQGDLEINSDQTLSDDDATSTSIFEETIVGPLLKYSA 730
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3679g00005 730 ProSiteProfiles Protein kinase domain profile. 403 688 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3679g00005 730 FunFam serine/threonine-protein kinase PBS1-like 377 477 - -
Gabi3679g00005 730 PANTHER RUST RESISTANCE KINASE LR10-RELATED 376 693 IPR045874 GO:0004672
Gabi3679g00005 730 Pfam Protein kinase domain 407 671 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3679g00005 730 Gene3D Transferase(Phosphotransferase) domain 1 478 683 - -
Gabi3679g00005 730 SUPERFAMILY Protein kinase-like (PK-like) 388 674 IPR011009 -
Gabi3679g00005 730 Gene3D Phosphorylase Kinase; domain 1 383 477 - -
Gabi3679g00005 730 ProSitePatterns Protein kinases ATP-binding region signature. 409 431 IPR017441 GO:0005524
Gabi3679g00005 730 FunFam PR5-like receptor kinase 478 685 - -
Gabi3679g00005 730 Coils Coil 623 643 - -
Gabi3679g00005 730 ProSitePatterns Serine/Threonine protein kinases active-site signature. 523 535 IPR008271 GO:0004672|GO:0006468
Gabi3679g00005 730 SMART serkin_6 403 673 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3679g00005 730 Pfam Wall-associated receptor kinase galacturonan-binding 37 100 IPR025287 GO:0030247
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3679g00005 Gabi-Chr3679 37509 46150 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3679g00005 37 689 Receptor kinase-like Gene Family AT5G38260 34.370 3.73e-102 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Gabi3679g00005 Pkinase 1.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3679g00005 - - tpra:123893228 909.827