Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3679g00003 ATGAGCAGAGGGAAATCCTTCTCCTGCTCCGAGGGTTTACTATTATGCTTTCTCCAAATTACAGTTGTACTACTCCAACTACAACAAACTTGTGCTGCAAATAATCACGAAACATGTGTCCCTTCATCCTGCGGCAAAATCACAAACATAAGAAGTCCATTTCGGCTGAAGCATGAACCAGCAAACTGTGGGGATCCGAGGTACGAGGTAGCTTGCGAAAACAACGTGACAATGCTAAATTTGTTTTCTGGTAAATACTATGTGCAGGCAATCAACTACAAAAACTTCACAATCCGGCTTGTTGATCCTGGCATTCAAGAGTCTGATAATTGCTCCTCCATTCCTCGCTATTTTTTATCCGCGTCCAATTTCTCTGATTATTACAACTATGGGAACTACGCGGATCCATATCAAGCCATTCAACTGAGAGCATTTCACCATTCTTTCAATCAATTCCAGCACGTGATTTACTTGAACTGCAGCACTCCAGTGAGGGATGATCCTCGGTACGTGGATACATCTCCCTGCGTCAAGTGGCATTCCAAAGGCCATGTTTATGCTTTCGCTGGGGAGTTGTTCGCTGGAGACTTAAAACCTGATTGCCACGTCAAGATGATTGCTACAACATCCGATTTTGGTTATGCTTCGGAATGGAGGCAGGGAAACAACAAAAACTTTACCTACGATGAAATTCTTAGGATGCTAGTCTATGGATTTGATGTTTCGTGGATGAGTTTTCCTTGTGAACCTCTTCGTTGTGCAATGCTAACTTGCTACTTTAATGAAACAAGCCAGAGTCCTGCTTGTGTGGACAACACGACGTCTGGTTACTGTTTCTCTCCATTGGGATTTTATGTCAGATGTGGACTACTACAAATAATAGGTCGAAAATTAGGCGATCCAGCTTCCACAGGCATTCCAGATTCTGAACTTGGTATTGAGATAGGAAGAGTCACGGGAAGGTATGTCTGGCTAACATATACAATGGTGAGATTTACGTTGGGTCTCATAGTTTTCTTTGTGGTATTGACATATACATGTCGAAGAAGACATAGATCAACGTATGAAAATATTGAAGATTTTCTGCGAGGGAACACCCTCATGCCAATAAGGTATTCATACAAAGAGATAAAGAAGATGACTAGAGATTTTAAGCACAAACTTGGTGAAGGAGGCTACGGCTCTGTTTATAAAGGAAAACTACGCAGTGGGCCTTTTGTAGCCATAAAGATGTTGGGAAAAGCTAAGGCTAATGGGCAAGATTTCATAAATGAAGTCGCAACCATAGGAACAATACATCATGCCAATGTGGTGCGACTTATTGGATTTTGTTTCGAGGAATCAAAACATGCTCTTGTTTATGAATATATGCCCAATGGTTCTCTTGATAGATATATTTTATCCAAAGAGGATGATATCTCTTTAACTTATGAGCAAATGTACGACATATCTCTTGGAGTGGCTCGTGGTATTGCTTATCTACATGAAGGCTGCGACATGCAAATTTTGCATTTTGATATCAAGCCCCATAACATACTTCTTGATGAGAACTTTATCCCTAAGGTTTCAGACTTTGGTCTTGCAAAGCTTTATCCTATTGATAATACCATTGTCACTTTGACTGCAGCAAGAGGAACAATTGGTTACATGGCTCCTGAATTATTCTACCAAAACATTGGAGGAGTATCCTACAAGGCTGATGTGTATAGCTTTGGAATGCTTTTGATGGAATTGGCAAACAGGAGAAGAAACTTGAATCCACATGCAGATCATTCAAGCCAAACTTTTTTTCCCTTTTGGATTTATAATCAATTGATTGAAGAAAGGGAGATAGAAATGAAAGATTTTACCAATGAGGAAAAGAATAATGTGAAGAAGATGTTCATAATTGCACTGTGGTGTATACAGTTGAAACCCAGTGACCGTCCTTCAATGGACAAAGTAATAGAGATGTTGGAAGGACATGTTGAGTGCATTGAAATGCCTCCGGAGCCTTCTTTTTATTCGACTGAAATGATTCAAGGAGATCTTGAAATCAACTCTGACCAAACTATATCAGATGATGCTGCTGGCTCTGTTAGTATTCTTGAAGAAAGTACAGAATATCCTTTATTGAGGTATTCTGCTTGA 2130 0.3995 MSRGKSFSCSEGLLLCFLQITVVLLQLQQTCAANNHETCVPSSCGKITNIRSPFRLKHEPANCGDPRYEVACENNVTMLNLFSGKYYVQAINYKNFTIRLVDPGIQESDNCSSIPRYFLSASNFSDYYNYGNYADPYQAIQLRAFHHSFNQFQHVIYLNCSTPVRDDPRYVDTSPCVKWHSKGHVYAFAGELFAGDLKPDCHVKMIATTSDFGYASEWRQGNNKNFTYDEILRMLVYGFDVSWMSFPCEPLRCAMLTCYFNETSQSPACVDNTTSGYCFSPLGFYVRCGLLQIIGRKLGDPASTGIPDSELGIEIGRVTGRYVWLTYTMVRFTLGLIVFFVVLTYTCRRRHRSTYENIEDFLRGNTLMPIRYSYKEIKKMTRDFKHKLGEGGYGSVYKGKLRSGPFVAIKMLGKAKANGQDFINEVATIGTIHHANVVRLIGFCFEESKHALVYEYMPNGSLDRYILSKEDDISLTYEQMYDISLGVARGIAYLHEGCDMQILHFDIKPHNILLDENFIPKVSDFGLAKLYPIDNTIVTLTAARGTIGYMAPELFYQNIGGVSYKADVYSFGMLLMELANRRRNLNPHADHSSQTFFPFWIYNQLIEEREIEMKDFTNEEKNNVKKMFIIALWCIQLKPSDRPSMDKVIEMLEGHVECIEMPPEPSFYSTEMIQGDLEINSDQTISDDAAGSVSILEESTEYPLLRYSA 709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3679g00003 709 Pfam Protein kinase domain 385 650 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3679g00003 709 SMART serkin_6 382 652 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3679g00003 709 Pfam Wall-associated receptor kinase galacturonan-binding 39 102 IPR025287 GO:0030247
Gabi3679g00003 709 PANTHER RUST RESISTANCE KINASE LR10-RELATED 354 669 IPR045874 GO:0004672
Gabi3679g00003 709 ProSiteProfiles Protein kinase domain profile. 382 667 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3679g00003 709 Gene3D Transferase(Phosphotransferase) domain 1 457 661 - -
Gabi3679g00003 709 FunFam PR5-like receptor kinase 457 663 - -
Gabi3679g00003 709 ProSitePatterns Serine/Threonine protein kinases active-site signature. 502 514 IPR008271 GO:0004672|GO:0006468
Gabi3679g00003 709 ProSitePatterns Protein kinases ATP-binding region signature. 388 410 IPR017441 GO:0005524
Gabi3679g00003 709 SUPERFAMILY Protein kinase-like (PK-like) 367 653 IPR011009 -
Gabi3679g00003 709 FunFam serine/threonine-protein kinase PBS1-like 350 456 - -
Gabi3679g00003 709 Gene3D Phosphorylase Kinase; domain 1 359 456 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3679g00003 Gabi-Chr3679 10979 22309 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3679g00003 39 671 Receptor kinase-like Gene Family AT5G38260 34.609 9.30e-104 329
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Gabi3679g00003 Pkinase 8e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3679g00003 - - tpra:123893228 877.856