Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3677g00004 ATGGCTCCAGTTTATGAATTTCTCTTCCTTTTGTTTTGTCACCTTATAATGGTACTTCCCTTGGCGGCTGGAGATGGGAATGGCTACAAAGGAGAGTGCCCTCCTTCATTTCAATGTGGATATGTTGGCAATATCAGCTTCCCTTTCACTACAACAGAACGCCAAGACTGTGGCTTATTGGCCATACACAATTGTGATGATCATCCAATGAAGCCAAAAGAGATCCAATTAGTCAATCAAGGGAAATGGTTTCTGGTTATACGCGTTGATCAGGTTCCCCTAGGTCCCACTGTTACAACTTTACAAGTTAGAGACAACAATCTGTATCAACTTCTGCAATCCAGAAATTGTGAAGCTTTCACGTACAATTACACTCTTCCTCCCACCTTCCATTTTGGTGCTTTTAGTATCAGAACTAAAGCAACCCTGTTTAGGTGCAACCAAACCCTCCATGTCAGGCCCCCAATATATATGTTTAATTATACAAAGTGCCATGACTACGATCTCTACTACGGGCCAGAAATCACTGCTAATTATGCTTTGACAGCATGTGCAAAGGTCCAGCTTCCAATTAAAGACGTGCCCGACTCTTATGACCCATTTACATTCGTAAACGCTGATATCAACGTTGAAGTAAAATTAACAGATGAATGTGCCAATTGTCACCATTTACAGAGAGGGCAGTGTCAACTCGACAACGGAGGGAGATTTTATTGTGCCAACAGTTACGATAAAATCGGAAAGAAGATGCCGATAGTGGCAACAGTGTCCTTGGTGACTGCTGGAGTTGCAGTGCTGATGGTCTTGGCTTGCTGCTTTAGGACAAAGATCTTCTCTCCCCTATATCTTTTGTTTTGGAAGGCCAAACCAACCCATAAGATTATTGAGGAGTTTTTGAAGGAACATGGACCCCTCCCTACCGCCAGGTACAGTTATTCAGAGGTCAAGAAAATTACCAACTCTTTCAGAAACAAATTAGGCCAAGGAGGATACGGATGTGTATACAAAGGGAAGTTACATGATGGACGTGTTGTTGCCGTCAAGATTTTAAGCAAATCAAAAGGTAACGGAGAAGAATTCATCAATGAAGTTGCAAGTATTAGTAAGACTTCACATGTTAACATTGTTACTCTTCTTGGATTCTGTTTGGACGGTTCCGAAAGGGCTCTAATATACGAATTTATGCCTAATGGATCTCTTGAGAAGTTCATATATGAAGACAAAAATCCGTTACAGGTTGCTCGCCAATTGGATTGCAAAACATTGTATGATATTGCAATTGGGGTTGCTCGTGGGTTAGAGTACCTGCATAGAGGTTGCAACACTAGAATCTTGCATTTTGACATAAAGCCTCATAACATTCTCTTGGATGAGAATTTCAGCCCCAAGATTTCAGATTTTGGACTTGCAAAAATTTGCACAAGAGAAGAAAGTATAGTATCCATATTTGGTGCAAGAGGAACTGCAGGGTATATTGCGCCAGAGGTATTTTCTAGGAATTTTGGTGCAGTATCACATAAGTCAGATGTTTACAGTTATGGAATGATGGTCTTAGAAATGGTTGGGATGAGAAAAAATATTAATGCTAAAGTTGACCGTTCCAGTGAAATATATTTTCCTCATTGGATTTACAATCGTCTTGAATCAAATCAGGAGCTTGGTCTTCGGAATATAAGAAATGAAAGTGATGACGAAAAGATGAGAAAGATGACAATAGTGGGCTTATGGTGCATCCAAACCGACCCTTCAACTCGACCAGCCATAAGTAAAGTGATAGAAATGCTAGAAGGTAGTATTGAGTTGTTGCAAATACCACCCAAACCTTTTCTGTCTTCTCCAAAAACCTCTCCAGTCCATTTGTCACGTGAGACACTGTAG 1878 0.4058 MAPVYEFLFLLFCHLIMVLPLAAGDGNGYKGECPPSFQCGYVGNISFPFTTTERQDCGLLAIHNCDDHPMKPKEIQLVNQGKWFLVIRVDQVPLGPTVTTLQVRDNNLYQLLQSRNCEAFTYNYTLPPTFHFGAFSIRTKATLFRCNQTLHVRPPIYMFNYTKCHDYDLYYGPEITANYALTACAKVQLPIKDVPDSYDPFTFVNADINVEVKLTDECANCHHLQRGQCQLDNGGRFYCANSYDKIGKKMPIVATVSLVTAGVAVLMVLACCFRTKIFSPLYLLFWKAKPTHKIIEEFLKEHGPLPTARYSYSEVKKITNSFRNKLGQGGYGCVYKGKLHDGRVVAVKILSKSKGNGEEFINEVASISKTSHVNIVTLLGFCLDGSERALIYEFMPNGSLEKFIYEDKNPLQVARQLDCKTLYDIAIGVARGLEYLHRGCNTRILHFDIKPHNILLDENFSPKISDFGLAKICTREESIVSIFGARGTAGYIAPEVFSRNFGAVSHKSDVYSYGMMVLEMVGMRKNINAKVDRSSEIYFPHWIYNRLESNQELGLRNIRNESDDEKMRKMTIVGLWCIQTDPSTRPAISKVIEMLEGSIELLQIPPKPFLSSPKTSPVHLSRETL 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3677g00004 625 ProSiteProfiles Protein kinase domain profile. 320 610 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3677g00004 625 PANTHER RUST RESISTANCE KINASE LR10-RELATED 287 613 IPR045874 GO:0004672
Gabi3677g00004 625 SMART serkin_6 320 595 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3677g00004 625 Gene3D Phosphorylase Kinase; domain 1 298 394 - -
Gabi3677g00004 625 FunFam Suppressor of npr1-1 constitutive 4 293 394 - -
Gabi3677g00004 625 Gene3D Transferase(Phosphotransferase) domain 1 395 609 - -
Gabi3677g00004 625 ProSitePatterns Protein kinases ATP-binding region signature. 326 348 IPR017441 GO:0005524
Gabi3677g00004 625 SUPERFAMILY Protein kinase-like (PK-like) 303 596 IPR011009 -
Gabi3677g00004 625 FunFam PR5-like receptor kinase 395 607 - -
Gabi3677g00004 625 Pfam Protein kinase domain 324 593 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3677g00004 625 ProSitePatterns Serine/Threonine protein kinases active-site signature. 444 456 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3677g00004 Gabi-Chr3677 23579 26080 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3677g00004 5 625 Receptor kinase-like Gene Family AT5G38260 36.916 2.09e-126 385
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Gabi3677g00004 Pkinase 2.8e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3677g00004 - - gmx:100783861 838.565