Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3677g00003 ATGGCCTTCCTTTTATTGTTCAAATCATTAATTTTGTCCCAGCTTCTTCTGCTTCTTCTTGTTTCAGCTCACGATGGAAAGTGTCCACCCTCTTTTGAATGTGGATATCTTGGGCAGATCAGTTTCCCTTTCACAATCACTCAACGCCAAGACTGTGGCGTATTGGCTATACATGGCTGTGATCTTAAGGATCCCACGGCTCCCAAAACCATCCAACTGAGCAATACAACAACAACAACAACACGGTTTCCTATTGTTACAAGCGTGGATTCTAAAACCATAACGATCGCAGATGATGTTCTACGGAAGAATTTGCTCTCCAAAAGTTGCAAAACCTTCAACAATTATACTCTTCCTCCCACCTCTCCTTTAGCTTCTTTCTACATCAAATATAATATAACTATGTTCAGATGCAATCACTCTCTCACTCTCACCATTCCCAAATTTTATAACTACTCAAACTGCTCCGATTACAATATCTACTACTATATCCCTCTAAATACTGCAAAAGCTCCTGGTTTCAAGTTGCCAAGCTCTTTAGCACCGTGTTCAACGATTCAGCTTCCAGTGAGAGACCAGTCTACTAGCGACCCCTTTGATTTTCTATCTCCACAGGTCTTAATTCAAGTAGAATTATCTGATGATTGCCACAAATGTCATCGCAGTCAAAGAGGCCAATGCCAACTTAACAACGAAGGAAAATTCTATTGCTGGAAAGCTGTTACAGCTACACTAGTGCTATTAGTAGGCATGCTTTGCTACACAAGATGGAAGAAGCAAAGTTCAAACCGTCAACGGATCGATGCGTTTTTGAAGAGACACGAACCCCTTCCAACCAGGAGGTATAGTTATTCTGAGATAAAGAAAGCGACCAACTCCTTCGGAAATAAATTAGGACAAGGGGGATTCGGCAGTGTATACAAAGGACAATCAAAGGATGGGCTTTATGTTGCAGTGAAGGTCCTAACTGAATTGAAAGATGATGGTGAGGAATTCATCAATGAAGTTGCAAGCATCACCAAAACTTGCCATGTTAACATTGTTATTCTTCTTGGGTTCTGCTTCGAAGGTTCTAAACGAGCTTTGGTTTATGAGTTTATGAGTAATGGGTCTCTTGAAAAGTTTATCTTTGAAGAAAATGACCAGATTGCAGATCGCCAATTGGATTGCAAAACATTGTACCATATTGCAATTGGTGTCGCTCAAGGGCTAGAATACCTTCATAAAGGATGCAATACTAGAATTTTGCATTTTGACATAAAACCTCATAATATTCTCTTGGATGAGAATTTCAGCCCCAAGATTTCAGATTTTGGACTTGCCAAAATTTGCACAAGAAAAGAAAGTGCAGTATCCATATTTGGTGCAAGAGGAACTGCAGGGTATATTGCGCCAGAGGTATTTTCTAGGAATTTTGGTGCAGTATCACATAAGTCAGATGTTTACAGTTATGGAATGATGGTCTTAGAAATGGTTGGGAGGAGAAAAAATATTAATGCTCAAGTTGACCGTTCCAGTGAAATATATTTTCCTCATTGGATTTACAATCGTCTTGAATCAAATCAGGAGCTTGGTCTTCGGAATATAAGAAATGAAAGTGATGACGAAAAGATGAGAAAGATGACAATAGTGGGCTTATGGTGCATACAAACAGACCCTTCAACTCGACCAGCCATAAGTAAAGTGGTGGAAATGCTAGAAGGTAGTGTTGAGTTGTTGCAAATACCACCTAAACCTTTTATGTCCTCTCCTTCCACCTCTCCAGTCCATTTGTCATGTGAGACACTGTAG 1791 0.3987 MAFLLLFKSLILSQLLLLLLVSAHDGKCPPSFECGYLGQISFPFTITQRQDCGVLAIHGCDLKDPTAPKTIQLSNTTTTTTRFPIVTSVDSKTITIADDVLRKNLLSKSCKTFNNYTLPPTSPLASFYIKYNITMFRCNHSLTLTIPKFYNYSNCSDYNIYYYIPLNTAKAPGFKLPSSLAPCSTIQLPVRDQSTSDPFDFLSPQVLIQVELSDDCHKCHRSQRGQCQLNNEGKFYCWKAVTATLVLLVGMLCYTRWKKQSSNRQRIDAFLKRHEPLPTRRYSYSEIKKATNSFGNKLGQGGFGSVYKGQSKDGLYVAVKVLTELKDDGEEFINEVASITKTCHVNIVILLGFCFEGSKRALVYEFMSNGSLEKFIFEENDQIADRQLDCKTLYHIAIGVAQGLEYLHKGCNTRILHFDIKPHNILLDENFSPKISDFGLAKICTRKESAVSIFGARGTAGYIAPEVFSRNFGAVSHKSDVYSYGMMVLEMVGRRKNINAQVDRSSEIYFPHWIYNRLESNQELGLRNIRNESDDEKMRKMTIVGLWCIQTDPSTRPAISKVVEMLEGSVELLQIPPKPFMSSPSTSPVHLSCETL 596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3677g00003 596 ProSitePatterns Serine/Threonine protein kinases active-site signature. 415 427 IPR008271 GO:0004672|GO:0006468
Gabi3677g00003 596 PANTHER RUST RESISTANCE KINASE LR10-RELATED 264 583 IPR045874 GO:0004672
Gabi3677g00003 596 SUPERFAMILY Protein kinase-like (PK-like) 273 567 IPR011009 -
Gabi3677g00003 596 ProSitePatterns Protein kinases ATP-binding region signature. 298 320 IPR017441 GO:0005524
Gabi3677g00003 596 Gene3D Transferase(Phosphotransferase) domain 1 367 574 - -
Gabi3677g00003 596 ProSiteProfiles Protein kinase domain profile. 292 581 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3677g00003 596 FunFam S-receptor-like serine/threonine-protein kinase 258 366 - -
Gabi3677g00003 596 Gene3D Phosphorylase Kinase; domain 1 253 366 - -
Gabi3677g00003 596 Pfam Protein kinase domain 295 564 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3677g00003 596 SMART serkin_6 292 566 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3677g00003 596 FunFam PR5-like receptor kinase 367 578 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3677g00003 Gabi-Chr3677 13005 17056 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3677g00003 4 592 Receptor kinase-like Gene Family AT1G66910 37.481 2.54e-125 382
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Gabi3677g00003 Pkinase 1e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3677g00003 - - gmx:100786495 734.947