Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3677g00002 ATGACGCTTATCCTGACAACAGCTGCTTCATCCGCTGCTGTTGCATTGCTGTTGCTCTTGGTTTACTGCTTCAGAAGAAAGCCTTTCAACCTAACATCTCGTTGCTTTTGGAATAAAAATTGTCCTACCGATGAAATGATAATTGAGCGCTTTCTAAAGCAACATGGTTCTCTTCAAACAAGAAGGTACAGTTACACCGAGATAAAGAAAGTCACTAATTGTTTCAAAGTCAAATTAGGAGAGGGAGGATATGGGAGCGTGTTTAAAGGAAAGCTAGAAGATGGGAGTCTTGTTGCAGTCAAGCTTTTAAGTAAACTTGAAGGAACTGGGGAGGAATTCATCAATGAAATTGCAAGCATTAGCAGGACATCTCATGTTAACATTGTCACTCTTGTGGGGTTTTGTTTCCAAGGTTCAAAACGAGCTCTAATTTATGAATTCATGCCTAACGGATCCCTCGAGAAGTTCGTATATGAAGAAAACTCCATGCTAGTTGGTCGGCAATTGGATTGCAAAACTTTGTATGAGATTGTCATTGGTGTTGCTCGTGGATTAGACTATTTGCACAGAGGCTGCAATACTAGAATCTTGCATTTTGACATAAAACCTCATAACATTCTACTTGATGAAAATTTCTGCCCAAAGATTTCAGATTTTGGACTTGCTAAGATATGTCCAAGAAAAGAGAGTATTGTGTCCTTATTGGGTACAAGGGGAACTGTTGGATACATTGCTCCTGAGGTGTTTTCTAGGAATTTCGGTGGGGTGTCTCATAAGTCTGATGTCTACAGTTATGGAATGTTGGTTCTAGATATGGTTGGAGGAAGACACAATAAAAATGTTGAACTTGATTGTTCTAGTGAAATATATTTTCCCCATTGGATTTATAAGAAACTTGAATTAAATCAGGATTTTGGTTTGCGGTGTATCAAGAATGAAAGTGACAGAGAGAGCGTGAGAAAGATGACAGTGGTGAGCTTATGGTGCATACAGAATGACCCTTCAACTCGACCATCAATGAGTAAAGTGGTTGAGATGCTAGAAGGAAGCCTGGACTCCTTGAACGTGCCGCCTAAACCTTTTCTGCGTTCTCCTTCAACATCTCCAGCACATTACTCCACTCAAACATCTGAGACTTCGTAA 1143 0.399 MTLILTTAASSAAVALLLLLVYCFRRKPFNLTSRCFWNKNCPTDEMIIERFLKQHGSLQTRRYSYTEIKKVTNCFKVKLGEGGYGSVFKGKLEDGSLVAVKLLSKLEGTGEEFINEIASISRTSHVNIVTLVGFCFQGSKRALIYEFMPNGSLEKFVYEENSMLVGRQLDCKTLYEIVIGVARGLDYLHRGCNTRILHFDIKPHNILLDENFCPKISDFGLAKICPRKESIVSLLGTRGTVGYIAPEVFSRNFGGVSHKSDVYSYGMLVLDMVGGRHNKNVELDCSSEIYFPHWIYKKLELNQDFGLRCIKNESDRESVRKMTVVSLWCIQNDPSTRPSMSKVVEMLEGSLDSLNVPPKPFLRSPSTSPAHYSTQTSETS 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3677g00002 380 PANTHER RUST RESISTANCE KINASE LR10-RELATED 47 368 IPR045874 GO:0004672
Gabi3677g00002 380 SUPERFAMILY Protein kinase-like (PK-like) 57 348 IPR011009 -
Gabi3677g00002 380 ProSiteProfiles Protein kinase domain profile. 73 362 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3677g00002 380 FunFam serine/threonine-protein kinase PBS1-like 44 147 - -
Gabi3677g00002 380 MobiDBLite consensus disorder prediction 355 380 - -
Gabi3677g00002 380 MobiDBLite consensus disorder prediction 366 380 - -
Gabi3677g00002 380 FunFam PR5-like receptor kinase 148 359 - -
Gabi3677g00002 380 Gene3D Phosphorylase Kinase; domain 1 49 147 - -
Gabi3677g00002 380 ProSitePatterns Serine/Threonine protein kinases active-site signature. 196 208 IPR008271 GO:0004672|GO:0006468
Gabi3677g00002 380 Gene3D Transferase(Phosphotransferase) domain 1 148 356 - -
Gabi3677g00002 380 SMART serkin_6 73 347 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3677g00002 380 ProSitePatterns Protein kinases ATP-binding region signature. 79 101 IPR017441 GO:0005524
Gabi3677g00002 380 Pfam Protein kinase domain 77 345 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3677g00002 Gabi-Chr3677 6937 9189 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3677g00002 35 380 Receptor kinase-like Gene Family AT5G38260 54.545 1.05e-128 382
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Gabi3677g00002 Pkinase 8.6e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3677g00002 - - mtr:11418569 530.791