Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3677g00001 ATGAACAAAAAGTGCTTCTTGTTTATCCTCAAGCCCCTCTACTCTCCCCTGATTCATTCATACATCATCCTCTTGTATATCCAAATCAGAACTACTTCGTGTTCTCCGGATCCAAAGTTCGAAACATGTCAACCCAAAGCCTGCGGCAACAACCTGAATATAAGCTACCCGTTCTACATCCAAGGAATACAAGAACCCTTTTGCGGGTACCCAGGTTTTGGTCTCTCTTGTGCCCAAAGTGGTTTTCCAATCCTCAATCTGTCTAATACCCAATACATCATCGATCAAATATTCTACGACAATCGGTCACTACGAGTGTCCAATGCTGTATTTTCAATTTCAACATCACACACCACCAAAGGCTGTCTTCCTCCCACCCAGAACCTCACACTTCCAAATAACATGTTCCATCTTCCTCCGAACCAAAAGGACATGATATTGTTCTTCGGCTGTGACTTACAATCGCTGCCCACAGGGCTGCAAGAGCACATAATCGGGTGTTCTGCAGAAAACGAAACGAGTTCAGTTGTGGCATTGTATAAGGATGATAAAAATCTGAGCTTTGCGTCAGAGAATTGCAAGGGTGAGGTGGTGGATGCGATAGTGGAAGATGGGTATGGAGGGATTGAAGAGGCGCTGAGAAAAGGGTTCTGGTTGAATTGGATCGCCAGTGATTGCAGCTTGTGCAGGAGCACCGGAGGGAGGTGCGGCTTCGATTCTGATATATACACTTTCAGGTGCTACTGCGCTGACGGAGTTCATGCTTCCAATTGTGGTTCAGCTGCTTCATCCGCTGCTGTTGCATTGCTGTTGCTCTTGGTTTACTGCTTCAGAAGAAAGCCTTTCAACCTAACATCTCGTTGCTTTTGGAATAAAAATTGTCCTACCGATGAAATGATAATTGAGCGCTTTCTAAAGCAACATGGTTCTCTTCAAACAAGAAGGTACAGTTACACCGAGATAAAGAAAGTCACTAATTGTTTCAAAGTCAAATTAGGAGAGGGAGGATATGGGAGCGTGTTTAAAGGAAAGCTAGAAGATGGGAGTCTTGTTGCAGTCAAGCTTTTAAGTAAACTTGAAGGAACTGGGGAGGAATTCATCAATGAAATTGCAAGCATTAGCAGGACATCTCATGTTAACATTGTCACTCTTGTGGGGTTTTGTTTCCAAGGTTCAAAACGAGCTCTAATTTATGAATTCATGCCTAACGGATCCCTCGAGAAGTTCGTATATGAAGAAAACTCCATGCTAGTTGGTCGGCAATTGGATTGCAAAACTTTGTATGAGATTGTCATTGGTGTTGCTCGTGGATTAGACTATTTGCACAGAGGCTGCAATACTAGAATCTTGCATTTTGACATAAAACCTCATAACATTCTACTTGATGAAAATTTCTGCCCAAAGATTTCAGATTTTGGACTTGCTAAGATATGTCCAAGAAAAGAGAGTATTGTGTCCTTATTGGGTACAAGGGGAACTGTTGGATACATTGCTCCTGAGGTGTTTTCTAGGAATTTCGGTGGGGTGTCTCATAAGTCTGATGTCTACAGTTATGGAATGTTGGTTCTAGATATGGTTGGAGGAAGACACAATAAAAATGTTGAACTTGATTGTTCTAGTGAAATATATTTTCCCCATTGGATTTATAAGAAACTTGAATTAAATCAGGATTTTGGTTTGCGGTGTATCAAGAATGAAAGTGACAGAGAGAGCGTGAGAAAGATGACAGTGGTGAGCTTATGGTGCATACAGAATGACCCTTCAACTCGACCATCAATGAGTAAAGTGGTTGAGATGCTAGAAGGAAGCCTGGACTCCTTGAACGTGCCGCCTAAACCTTTTCTGCGTTCTCCTTCAACATCTCCAGCACATTACTCCACTCAAACATCTGAGACTTCGTAA 1902 0.4227 MNKKCFLFILKPLYSPLIHSYIILLYIQIRTTSCSPDPKFETCQPKACGNNLNISYPFYIQGIQEPFCGYPGFGLSCAQSGFPILNLSNTQYIIDQIFYDNRSLRVSNAVFSISTSHTTKGCLPPTQNLTLPNNMFHLPPNQKDMILFFGCDLQSLPTGLQEHIIGCSAENETSSVVALYKDDKNLSFASENCKGEVVDAIVEDGYGGIEEALRKGFWLNWIASDCSLCRSTGGRCGFDSDIYTFRCYCADGVHASNCGSAASSAAVALLLLLVYCFRRKPFNLTSRCFWNKNCPTDEMIIERFLKQHGSLQTRRYSYTEIKKVTNCFKVKLGEGGYGSVFKGKLEDGSLVAVKLLSKLEGTGEEFINEIASISRTSHVNIVTLVGFCFQGSKRALIYEFMPNGSLEKFVYEENSMLVGRQLDCKTLYEIVIGVARGLDYLHRGCNTRILHFDIKPHNILLDENFCPKISDFGLAKICPRKESIVSLLGTRGTVGYIAPEVFSRNFGGVSHKSDVYSYGMLVLDMVGGRHNKNVELDCSSEIYFPHWIYKKLELNQDFGLRCIKNESDRESVRKMTVVSLWCIQNDPSTRPSMSKVVEMLEGSLDSLNVPPKPFLRSPSTSPAHYSTQTSETS 633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3677g00001 633 SUPERFAMILY Protein kinase-like (PK-like) 310 601 IPR011009 -
Gabi3677g00001 633 ProSitePatterns Serine/Threonine protein kinases active-site signature. 449 461 IPR008271 GO:0004672|GO:0006468
Gabi3677g00001 633 MobiDBLite consensus disorder prediction 619 633 - -
Gabi3677g00001 633 MobiDBLite consensus disorder prediction 608 633 - -
Gabi3677g00001 633 Pfam Protein kinase domain 330 598 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3677g00001 633 ProSiteProfiles Protein kinase domain profile. 326 615 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3677g00001 633 FunFam serine/threonine-protein kinase PBS1-like 298 400 - -
Gabi3677g00001 633 Gene3D Transferase(Phosphotransferase) domain 1 401 609 - -
Gabi3677g00001 633 ProSitePatterns Protein kinases ATP-binding region signature. 332 354 IPR017441 GO:0005524
Gabi3677g00001 633 SMART serkin_6 326 600 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3677g00001 633 PANTHER RUST RESISTANCE KINASE LR10-RELATED 299 621 IPR045874 GO:0004672
Gabi3677g00001 633 FunFam PR5-like receptor kinase 401 612 - -
Gabi3677g00001 633 Gene3D Phosphorylase Kinase; domain 1 302 400 - -
Gabi3677g00001 633 Pfam Wall-associated receptor kinase galacturonan-binding 43 107 IPR025287 GO:0030247
Gabi3677g00001 633 Pfam Wall-associated receptor kinase C-terminal 183 252 IPR032872 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3677g00001 Gabi-Chr3677 6937 10932 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3677g00001 22 633 Receptor kinase-like Gene Family AT5G38260 39.969 3.25e-143 429
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Gabi3677g00001 Pkinase 3.4e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3677g00001 - - mtr:11418569 841.647