Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3672g00003 ATGGCACACCAGGAATTTTCTATTGCTCTAATGATTCTCATTGTTCTCTTTATCAACATCAACCTTCAGGGTGCCACTGCTGACTATGGTGGCTGGCAGAGTGCTCATGCTACTTTCTATGGTGGGGGAGCATGTGGCTATGGGAATTTGTATAGCCAGGGTTATGGAACTGACACTGCAGCCTTAAGCACTGCTTTGTTCAACAATGGCTTAAGCTGTGGAGCTTGCTATGAAATGAGATGTGATGATGACCCAAGATGGTGCAAACCAGGTTCTATTATTGTTACTGCTACAAACTTTTGTCCACCAAACCCATCTTTGCCAAACAACAATGGTGGTTGGTGCAACCCTCCTTTGCAACACTTTGATATGGCTGAACCAGCCTTCCTTCAAATTGCACAATATAGGGCTGGAATTGTGCCTGTAGCCTTTAGAAGGGTGCCATGTGTCAAAAAGGGAGGAATAAGGTTCACCATCAATGGACACTCTTACTTCAACCTAGTTTTGGTCACAAATGTGGGTGGTGCTGGGGATGTTCATGCAGTGTCCATCAAAGGGTCCAGAACTGGGTGGCAACCCATGTCAAGGAACTGGGGTCAAAACTGGCAGAGTAACTCCTACCTCAATGGACAAAGCCTCTCTTTTCAAGTCACCTCCAGTGATGGTAGAACTGTGACAAGCTTCAATGTGGCATCAGCCAATTGGCAGTTTGGTCAGACCTTCCAAGGTGGTCAATTTTAG 741 0.4588 MAHQEFSIALMILIVLFININLQGATADYGGWQSAHATFYGGGACGYGNLYSQGYGTDTAALSTALFNNGLSCGACYEMRCDDDPRWCKPGSIIVTATNFCPPNPSLPNNNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPVAFRRVPCVKKGGIRFTINGHSYFNLVLVTNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNSYLNGQSLSFQVTSSDGRTVTSFNVASANWQFGQTFQGGQF 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3672g00003 246 SMART dpbb_1 59 144 IPR007112 -
Gabi3672g00003 246 Pfam Expansin C-terminal domain 155 231 IPR007117 -
Gabi3672g00003 246 Gene3D - 153 246 IPR036749 -
Gabi3672g00003 246 PANTHER EXPANSIN-A15 10 246 IPR002963 GO:0009664
Gabi3672g00003 246 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 42 154 IPR007112 -
Gabi3672g00003 246 SUPERFAMILY PHL pollen allergen 151 243 IPR036749 -
Gabi3672g00003 246 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 164 243 IPR007117 -
Gabi3672g00003 246 Pfam Lytic transglycolase 59 143 IPR009009 -
Gabi3672g00003 246 FunFam Expansin 154 246 - -
Gabi3672g00003 246 SUPERFAMILY Barwin-like endoglucanases 13 172 IPR036908 -
Gabi3672g00003 246 CDD DPBB_EXPA_N 31 149 - -
Gabi3672g00003 246 Gene3D - 18 149 IPR036908 -
Gabi3672g00003 246 PRINTS Expansin signature 112 129 IPR002963 GO:0009664
Gabi3672g00003 246 PRINTS Expansin signature 54 68 IPR002963 GO:0009664
Gabi3672g00003 246 PRINTS Expansin signature 153 165 IPR002963 GO:0009664
Gabi3672g00003 246 PRINTS Expansin signature 200 221 IPR002963 GO:0009664
Gabi3672g00003 246 PRINTS Expansin signature 229 245 IPR002963 GO:0009664
Gabi3672g00003 246 PRINTS Expansin signature 129 142 IPR002963 GO:0009664
Gabi3672g00003 246 PRINTS Expansin signature 165 186 IPR002963 GO:0009664
Gabi3672g00003 246 PRINTS Expansin signature 81 92 IPR002963 GO:0009664
Gabi3672g00003 246 PRINTS Expansin signature 93 103 IPR002963 GO:0009664
Gabi3672g00003 246 PRINTS Expansin/Lol pI family signature 137 153 IPR007118 GO:0005576
Gabi3672g00003 246 PRINTS Expansin/Lol pI family signature 229 243 IPR007118 GO:0005576
Gabi3672g00003 246 PRINTS Expansin/Lol pI family signature 63 81 IPR007118 GO:0005576
Gabi3672g00003 246 PRINTS Expansin/Lol pI family signature 41 59 IPR007118 GO:0005576
Gabi3672g00003 246 PRINTS Expansin/Lol pI family signature 191 205 IPR007118 GO:0005576
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3672g00003 Gabi-Chr3672 45668 47341 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3672g00003 2 246 Expansin Gene Family AT2G40610 76.378 1.86e-141 395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3672g00003 - - gmx:100499976 457.218