Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3671g00001 ATGCGGTTTGTGTGGCCATATGGCGGAAGGAGTGTGTTTCTCAGTGGTTCTTTCACACGGTGGTCTCAGCTTCTTCCACTGTCGCCAGTCGAAGGTTGCCCAACTGTGTTTCAAGTCATTTATAGCTTGCCCCCTGGTTATCATCAGTACAAGTTTTTTGTTGATGGAGAATGGCAGCATGATGAGCATCAGCCTTTTGTACCTGGAGAATATGGGATAGTCAACACTGTCTTCTTGGCTACTGATCCTAACTACATACCTGTTTTAACTCCAGATATTGCTTCTGGAAATAACATGGATGTGGATAATGAGGCTTTTCGCCGTGGGGTTCGGTTGACGGATGGTACATTGAGTGAGGTTCTGCCAAGAATATCAGATGCTGATGTACAGATCTCCTGTCAGCGTATTTCTGCATTTCTGTCTATGCACACAGCTTATGAATTATTTCCTGAGTCAGGCAAGGTTGTTGCCTTGGATGTTGATCTGCCAGTGAAACAGGCATTTCATATACTGCATGAGCAGGGAATTTTCATGGCTCCACTTTGGGACTTCTGCAAGGGACAATTTGTTGGTGTTCTTAGTGCTTTGGATTTTATTCTAATTTTAAGAGAGGTGCGTGCTGTCAATTTGGATTATGGGTTTACAATATTTGAAAGCCTCAATGCACTGGTGAAAAGTCCAAAATACCCTGCGAAAGACACCCTTATCGGTGTAGACACGTCGTTCGTCACAACACTCGTCCGTATCAATCTTGAACACAGAACCAGGATTAATCTGTGTCATGTAGGTCAGCCAACCAGGTAA 804 0.4403 MRFVWPYGGRSVFLSGSFTRWSQLLPLSPVEGCPTVFQVIYSLPPGYHQYKFFVDGEWQHDEHQPFVPGEYGIVNTVFLATDPNYIPVLTPDIASGNNMDVDNEAFRRGVRLTDGTLSEVLPRISDADVQISCQRISAFLSMHTAYELFPESGKVVALDVDLPVKQAFHILHEQGIFMAPLWDFCKGQFVGVLSALDFILILREVRAVNLDYGFTIFESLNALVKSPKYPAKDTLIGVDTSFVTTLVRINLEHRTRINLCHVGQPTR 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3671g00001 267 FunFam Sucrose nonfermenting 4-like protein 1 81 - -
Gabi3671g00001 267 Gene3D Immunoglobulins 1 88 IPR013783 -
Gabi3671g00001 267 Gene3D - 123 248 IPR046342 -
Gabi3671g00001 267 PANTHER 5'-AMP-ACTIVATED PROTEIN KINASE , BETA SUBUNIT 2 79 - -
Gabi3671g00001 267 CDD E_set_AMPKbeta_like_N 2 78 - -
Gabi3671g00001 267 SUPERFAMILY CBS-domain pair 135 212 IPR046342 -
Gabi3671g00001 267 ProSiteProfiles CBS domain profile. 148 208 IPR000644 -
Gabi3671g00001 267 SUPERFAMILY E set domains 2 80 IPR014756 -
Gabi3671g00001 267 Pfam Glycogen recognition site of AMP-activated protein kinase 2 79 IPR032640 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3671g00001 Gabi-Chr3671 5050 8768 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3671g00001 8 98 Protein tyrosine phosphatase (PTP) family AT3G52180 32.979 4.10e-07 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3671g00001 - - gmx:100785692 396.356