Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3668g00022 ATGGCACTGCGTTCTGCCCTTACTTCCTTGCCAATATTGTTTTGCCTATGTTTGTTTTGCGTGAATGCAACTACCAACAAAACATTCCTGCGAATGGGGCAGTCAGTGGGAAACTCAGACACCATTGTTTCTGACAGTGGGAACTACGAACTGGGCTTTTTTACCAGGGAGAATTCCACCAAGTATTATGTAGGTGTATGGTTTACAAAGGTTCCAGACGACAAGATTGTTTGGGTTGCTAACAGAGATTATGCCTTTCAAACTTCCTCAGCTGTTCTTACTGTTAAGTCTGATGGAAATATTGTGATCGTGGACGGAAAAATGACGTACCAAGTGACCAACATTTCAAATATCGATAGTACTTACGCTATGCTCTTGGATTCAGGAAACTTGATACTGGTCAATTACTCGAATCAAGCAGTTTTGTGGCAGGGTTTTGATAATCCTACGGATACCCTTTTGCCTGGAATGAACTTAGGACATGATTATGAGTTAGGATACAGTTGGTCATTGAGATCATGGACAAGTGCAGATGACCCTTCTCCAGGAGATTTTTCTCTCGAGTATGATTTTGGCCAGGCAAGTCTAATCATCAACAAGAGTTCTAATTCTAAGGTATTCTGGATTGATGACAATTCCAATGTTTCAATTCAGAGTGTTATTAACCGAATAGGTATGGAACAAAACATCATGAACTATTTCACTTGGCAAGCTAATAGCAATTCTCGGGTGGTACTAGAAGTTTCTGGGGAACTTAACCTGCAGTATTGGTCAGAGGAAGATAAACGTTGGGTTTCTCTACAGTCATCAAAGTGTGGAACAAACAATTCTTGTGGAGCTTTTTCCATTTGTAATCCTCAAGCTCTTGATCCTTGTGAGTGTCTTTATGGTTTCAAGCCGTTTGATGTTGATTCTTGGAGGCAAGGGATCTCATCTGCTGGCTGTGTCAGGAAAACAGAGTTATCCTGCAGCAACACAAGCAGTGACACTGTTCAGGGGAATGATGGGTTCTTGCAGCTTAGTAAGGTGGAATTACCTTCTAGCTCAGATGGAGTCACGTTAAAGACGGATACTGCAAGAAAATGTGAAAGTATTTGCTCTAGCAATTGTTCTTGTGTTGCTTATGTTTATGATTTTAACGCTACCTGCCAATTATGGATGGACCAAGTATTGATTTTAAAGAACATCTCAGCTGATATTTATAAAGATAATCCAAGTTTTTATCTCAGACTTGCTGCCTCAGAAATCGTTGATTCAAACATACCGAATGAAACAAAACCACCGAATGCATTTGACAAGCATGATAACAGGCGGAGGGATAGACTTCTAATTGTTATACTGATCTCATTTACAACGTTGCTTATAATATCGTGCCTAATCACTTACTGGGCTAGAAGGCAAAGGAGGAAAGGTAAGAAAGGGGAAGATTTGCTACATTTTGAAGTAGGAATGAGCATGAAAGTCAGAGAGTCAGAGTTTACTGAAGCAAATAAGGGTGCAAAAGTTAATAACAAGGAAGTTAAATTGCCATTATTCAGTTTCGTGAGTGTTTCAGCAGCAACTGATAACTTTTCAGATGCAAATAAACTTGGTGAGGGTGGCTTTGGACCAGTTTACAAGGGTAAATTATTGAATGGGGATGAGGTTGCTGTAAAAAGGCTATCTCGAAGATCTGGTCAAGGATGGGAGGAGTTGAGAAATGAAGCCTTGTTAATTGCTAAACTTCAACACAATAATCTTGTTAGACTTTTGGGCTGCTGCATTGATCGAGATGAAAAGATGCTGATTTATGAATTTATGCCTAATAAAAGCTTGGATTTTTTTCTTTTTGATGCAACAAAAAGAAGGATGCTAGATTGGGGAACACGAGTTCGGATAATTGATGGAATTGCACAAGGTCTCCTTTACCTTCATCAATATTCCAGGTTCCGGATTATTCATCGAGATTTGAAAGCTAGCAACATATTGTTAGACATCAACATGAATCCTAAAATATCAGACTTTGGAATGGCAAGAATATTTGGTGAGAATGAACTTCAAGCAAATACAAACCGGATAGTAGGGACTTATGGCTACATGTCCCCTGAATATGCTCTGGAAGGCCTTTTCTCAATAAAATCTGATGTGTTTAGCTTTGGCATCCTTTTGTTAGAGATTGTAAGTGGCAAGAAGAATACTGGTTTTTATCAAACAAACTCCCTCAATCTTCTTGGATACGCTTGGGATCTATGGACAAGCAATTCGGGAACGGATATGATGGATCCAGCATTGGAAGATTCCCCTAGTAAGCATATAGTGTTAAGATATGTGAACATAGGACTTCTATGTGTTCAAGAAAGTCCACAAGACAGGCCAACCATGTCTGATGTTGTATCAATGATAGGCAATGACACTAAGGCGCTTCCTTGCCCTAAGCCACCTGCATTTCTAAATGTGAGAGGCAATGAAAATTCACGAATTGCCAGAAGGATGGCAGAAAACTTATCTGTGAATGGTATGACACATTCACTTCTGGAAGCAAGATGA 2526 0.3959 MALRSALTSLPILFCLCLFCVNATTNKTFLRMGQSVGNSDTIVSDSGNYELGFFTRENSTKYYVGVWFTKVPDDKIVWVANRDYAFQTSSAVLTVKSDGNIVIVDGKMTYQVTNISNIDSTYAMLLDSGNLILVNYSNQAVLWQGFDNPTDTLLPGMNLGHDYELGYSWSLRSWTSADDPSPGDFSLEYDFGQASLIINKSSNSKVFWIDDNSNVSIQSVINRIGMEQNIMNYFTWQANSNSRVVLEVSGELNLQYWSEEDKRWVSLQSSKCGTNNSCGAFSICNPQALDPCECLYGFKPFDVDSWRQGISSAGCVRKTELSCSNTSSDTVQGNDGFLQLSKVELPSSSDGVTLKTDTARKCESICSSNCSCVAYVYDFNATCQLWMDQVLILKNISADIYKDNPSFYLRLAASEIVDSNIPNETKPPNAFDKHDNRRRDRLLIVILISFTTLLIISCLITYWARRQRRKGKKGEDLLHFEVGMSMKVRESEFTEANKGAKVNNKEVKLPLFSFVSVSAATDNFSDANKLGEGGFGPVYKGKLLNGDEVAVKRLSRRSGQGWEELRNEALLIAKLQHNNLVRLLGCCIDRDEKMLIYEFMPNKSLDFFLFDATKRRMLDWGTRVRIIDGIAQGLLYLHQYSRFRIIHRDLKASNILLDINMNPKISDFGMARIFGENELQANTNRIVGTYGYMSPEYALEGLFSIKSDVFSFGILLLEIVSGKKNTGFYQTNSLNLLGYAWDLWTSNSGTDMMDPALEDSPSKHIVLRYVNIGLLCVQESPQDRPTMSDVVSMIGNDTKALPCPKPPAFLNVRGNENSRIARRMAENLSVNGMTHSLLEAR 841
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3668g00022 841 SMART serkin_6 524 767 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3668g00022 841 CDD B_lectin 34 149 IPR001480 -
Gabi3668g00022 841 Gene3D - 22 146 IPR036426 -
Gabi3668g00022 841 ProSitePatterns Serine/Threonine protein kinases active-site signature. 645 657 IPR008271 GO:0004672|GO:0006468
Gabi3668g00022 841 ProSiteProfiles Bulb-type lectin domain profile. 27 146 IPR001480 -
Gabi3668g00022 841 SMART blect_4 33 149 IPR001480 -
Gabi3668g00022 841 ProSiteProfiles Protein kinase domain profile. 524 810 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3668g00022 841 Pfam PAN-like domain 332 389 IPR003609 -
Gabi3668g00022 841 Gene3D Transferase(Phosphotransferase) domain 1 600 801 - -
Gabi3668g00022 841 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 113 811 - -
Gabi3668g00022 841 Pfam Protein tyrosine and serine/threonine kinase 528 793 IPR001245 GO:0004672|GO:0006468
Gabi3668g00022 841 ProSiteProfiles PAN/Apple domain profile. 323 412 IPR003609 -
Gabi3668g00022 841 SUPERFAMILY Protein kinase-like (PK-like) 507 813 IPR011009 -
Gabi3668g00022 841 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 22 146 - -
Gabi3668g00022 841 Pfam Domain of unknown function (DUF3403) 796 841 IPR021820 GO:0004674
Gabi3668g00022 841 CDD PAN_AP_plant 319 412 - -
Gabi3668g00022 841 SMART ntp_6 332 404 IPR003609 -
Gabi3668g00022 841 PIRSF SRK 1 841 IPR024171 GO:0004674
Gabi3668g00022 841 Pfam S-locus glycoprotein domain 223 300 IPR000858 GO:0048544
Gabi3668g00022 841 Gene3D Phosphorylase Kinase; domain 1 498 599 - -
Gabi3668g00022 841 FunFam Uncharacterized protein 693 803 - -
Gabi3668g00022 841 FunFam Uncharacterized protein 500 599 - -
Gabi3668g00022 841 Pfam D-mannose binding lectin 76 174 IPR001480 -
Gabi3668g00022 841 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase B120 600 691 - -
Gabi3668g00022 841 SUPERFAMILY alpha-D-mannose-specific plant lectins 76 180 IPR036426 -
Gabi3668g00022 841 CDD STKc_IRAK 530 794 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3668g00022 Gabi-Chr3668 402843 406478 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3668g00022 505 810 Receptor kinase-like Gene Family AT4G23250 58.974 3.05e-124 389
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gabi3668g00022 PK_Tyr_Ser-Thr 1.7e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3668g00022 - - gmx:100811148 1177.93