Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3668g00018 ATGGTGTATAACATCTTGTTTAGTTCTTATTTATTTATTTGGTTCTTATTATCCTCCCACGTGACGGTAAGTTCAACTTCACTGGACAGTTTAGCAGGGAATCAATCTATCCGAGATGGTGAGACTTTAGTTTCAGAAGGTGGAACTTTTGAAGTGGGTTTCTTCAGCCCTGGAAGTTCAACAGGTCGATACTTGGGTGTATGGTACCGCAATATATCCCCTTTAAAAGCGGTATGGGTGGCCAACCGAGAAACACCACTCCACAATAATTCAGGAGTTTTAAAACTCAATCAAAGTGGCGTTCTTGTTATTCTCAATAGCACAAACAGCAGTGTTTGGTATTCCAACATATCAAGCCAAGCAGTGAGTAATCCAATTGCGCAGCTCTTGGACTCTGGAAATCTTGTGGTGAAAAATGGACAGGGTGCTGACGAGGACAACTTTTTATGGCAAAGTTTTGATTATCCGGGGGATACACTTCTGTCTGGGATGAAGCTTGGTTGGAACTTAGAAACTGGTCTACAAAGGTTTCTATCATCTTGGAAAAGTGCAGATGATCCAGCTAAGGGAGACTACTCAGTTAAACTTGACCTTAGAGGATATCCTCAACTTTTTAGATTCAAGGGATCTGCAATAGAATATAGATTAGGGTCGTGGAATGGCCTGACTATTACAGGATATGCAAATCATCAGGTCGAAACAAAAGTTAGATATGAATTCGTTTTGAATGAAAAACAAGTGTATTTTGAGATTGATTTCATAGATAGATCGACGTTTACCATGTATACACTGACCCCTTCAGGGGTCGAGCAAAAATTAGTTTGGACAAGTCAAACAAGCAGGCAAGTTATAACATTTGGGGGAGTAGAACCGTGTGAAAACTATGCCTTATGTGGTGCAAATTCTATATGCAAGATGGATGATAAGAATTTTCCATCCTGTGAATGCCTCAAAGCATATGTTCCCAAGTTTCCTGAACAATGGACTAAATCCAATTGGTCTAACGGTTGTGTTCCAAGGACTAAATCTAGTTGTAGAAACAACAACACGGACGGGTTCTGGAAGTACTCAGGATTGAAAATACCGGACACATCTTGGTCATGGTATAGTAAGACAATGAACATTGATGAATGTCAGAAGTTATGTCTGAAAAACTGTTCCTGCACATCATTTGCTAATTTGGATATCAGTAAAGGAGGAAGTGGCTGTCTGCTTTGGTTTCATAATCTGATTGATACGATGCAATCCTCTCACGTGGGACAAGACCTTTACATCAGAGTCCCTGCTTCAGAACTTGAAGTTCATGTTGCAGTTAATGGCCATGGACACAAGAAGAAGAAGCTGGTAGGAATTACAGTTTCTGTGATTATTTTCGGATTAACTACATGCTTCATCATAATCATACTTAGAAGGCGAGGTGTACCAAGCAAAATTTTCGGGAAGCATTTCAAAGATAGACTGAGGAAGGAAGACATTGATCTGCCAACATTGGATTTGGCAATCATAACTAAAGCTACTGAAAACTTTTCAAGCAGTAACAAACTGGGAGAAGGTGGCTTTGGACCAGTATACAAGGGAAAACTCAATGATGAGCAACTGATAGCTGTAAAAAGGCTTTCAAAGAAGTCTGGACAAGGAATTGAAGAGTTCAAAAATGAAGTGGTGTTGATCGCCAAACTCCAGCACCGAAATCTTGTTAAGCTTCTTGCTTGCTGCATTCAAGGAGAAGAAAGAATGTTGATATATGAATACATGCCCAACAAAAGCTTGGACTACTTTATTTTTGATGAAACTAAAAGGAAGGTTTTAGATTGGCCTAAGCGTTTAAACATTATCAGTGGCATTGCTCGAGGACTTCTCTATCTTCATCAAGACTCTAGATTGAGGATCATTCATAGAGATCTAAAAACTAGCAATGTTCTTCTAGATGCAAATTTGGATCCAAAAATATCGGACTTTGGCTTGGCTCGAACATTTTTGGGAGATCAAGTGGAGGCAAACACAAATAGGGTGGTTGGAACATATGGTTACATGCCTCCCGAGTATGCCGTGCATGGGCATTTCTCTATGAAATCAGATGTGTTTAGTTATGGTGTGATAATACTAGAGATTGTAAGTGGGAAGAAGAATAGAGGATTTTCAGACCCAGAACACTATCGTAACCTTCTTGGACATGCATGGAGATTATGGGCTGAAGAGAGGGCACTAGAGCTATTGGATGAAGTGTTCGGGGAACAATGCACACTCTCTGAAGTCATGCGATGCATACAGGTTGGCCTATTATGCGTGCAACAAAGACCAGAAGATAGGCCAGACATGTCATCTGTGGTTCTAATGCTCAATGGTGAGAAATTATTGCCACAACCAAAGGCTCCTGGCTTCTACATTGAAAATAATGTTACACCTGAAGTACATTCTTTGTCGGTAAATCGCAAACTGTGCTCAGCTAATGAAATTTCCATTTCAGTGCTAGATGGAAGATAG 2484 0.401 MVYNILFSSYLFIWFLLSSHVTVSSTSLDSLAGNQSIRDGETLVSEGGTFEVGFFSPGSSTGRYLGVWYRNISPLKAVWVANRETPLHNNSGVLKLNQSGVLVILNSTNSSVWYSNISSQAVSNPIAQLLDSGNLVVKNGQGADEDNFLWQSFDYPGDTLLSGMKLGWNLETGLQRFLSSWKSADDPAKGDYSVKLDLRGYPQLFRFKGSAIEYRLGSWNGLTITGYANHQVETKVRYEFVLNEKQVYFEIDFIDRSTFTMYTLTPSGVEQKLVWTSQTSRQVITFGGVEPCENYALCGANSICKMDDKNFPSCECLKAYVPKFPEQWTKSNWSNGCVPRTKSSCRNNNTDGFWKYSGLKIPDTSWSWYSKTMNIDECQKLCLKNCSCTSFANLDISKGGSGCLLWFHNLIDTMQSSHVGQDLYIRVPASELEVHVAVNGHGHKKKKLVGITVSVIIFGLTTCFIIIILRRRGVPSKIFGKHFKDRLRKEDIDLPTLDLAIITKATENFSSSNKLGEGGFGPVYKGKLNDEQLIAVKRLSKKSGQGIEEFKNEVVLIAKLQHRNLVKLLACCIQGEERMLIYEYMPNKSLDYFIFDETKRKVLDWPKRLNIISGIARGLLYLHQDSRLRIIHRDLKTSNVLLDANLDPKISDFGLARTFLGDQVEANTNRVVGTYGYMPPEYAVHGHFSMKSDVFSYGVIILEIVSGKKNRGFSDPEHYRNLLGHAWRLWAEERALELLDEVFGEQCTLSEVMRCIQVGLLCVQQRPEDRPDMSSVVLMLNGEKLLPQPKAPGFYIENNVTPEVHSLSVNRKLCSANEISISVLDGR 827
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3668g00018 827 Gene3D Transferase(Phosphotransferase) domain 1 585 787 - -
Gabi3668g00018 827 Pfam Protein tyrosine and serine/threonine kinase 512 778 IPR001245 GO:0004672|GO:0006468
Gabi3668g00018 827 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 344 427 - -
Gabi3668g00018 827 SUPERFAMILY Hairpin loop containing domain-like 347 412 - -
Gabi3668g00018 827 CDD STKc_IRAK 515 782 - -
Gabi3668g00018 827 Gene3D - 22 153 IPR036426 -
Gabi3668g00018 827 SMART ntp_6 348 427 IPR003609 -
Gabi3668g00018 827 CDD B_lectin 34 156 IPR001480 -
Gabi3668g00018 827 SUPERFAMILY alpha-D-mannose-specific plant lectins 77 187 IPR036426 -
Gabi3668g00018 827 ProSiteProfiles Protein kinase domain profile. 509 786 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3668g00018 827 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 16 767 - -
Gabi3668g00018 827 Pfam PAN-like domain 345 413 IPR003609 -
Gabi3668g00018 827 SUPERFAMILY Protein kinase-like (PK-like) 495 800 IPR011009 -
Gabi3668g00018 827 Pfam Domain of unknown function (DUF3403) 786 827 IPR021820 GO:0004674
Gabi3668g00018 827 Gene3D Hepatocyte Growth Factor 344 424 - -
Gabi3668g00018 827 CDD PAN_AP_plant 341 428 - -
Gabi3668g00018 827 ProSiteProfiles PAN/Apple domain profile. 345 428 IPR003609 -
Gabi3668g00018 827 Pfam S-locus glycoprotein domain 214 324 IPR000858 GO:0048544
Gabi3668g00018 827 Pfam D-mannose binding lectin 78 182 IPR001480 -
Gabi3668g00018 827 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 23 153 - -
Gabi3668g00018 827 ProSitePatterns Serine/Threonine protein kinases active-site signature. 630 642 IPR008271 GO:0004672|GO:0006468
Gabi3668g00018 827 PIRSF SRK 1 827 IPR024171 GO:0004674
Gabi3668g00018 827 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 476 584 - -
Gabi3668g00018 827 Gene3D Phosphorylase Kinase; domain 1 483 584 - -
Gabi3668g00018 827 ProSiteProfiles Bulb-type lectin domain profile. 28 150 IPR001480 -
Gabi3668g00018 827 SMART serkin_6 509 778 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3668g00018 827 SMART blect_4 34 156 IPR001480 -
Gabi3668g00018 827 FunFam - 585 789 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3668g00018 Gabi-Chr3668 334247 338084 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3668g00018 497 797 Receptor kinase-like Gene Family AT4G23140 59.740 3.84e-127 395
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gabi3668g00018 PK_Tyr_Ser-Thr 1.7e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3668g00018 - - gmx:100790261 1145.18