Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3668g00015 ATGGAAAGCTTTAAAAGTTCCGTTATGTACTCTTTGTTTCTCTCCTTCGTAAGCATGTCCTCCGCAGTGGACATGATAACTCCAAGCCAACACATCCAAGACGGTAAGAATGAAACCTTGGTTTCTACAAATGGAACCTTTGAAGCAGGATTCTTCAGCCCTGAAAATTCAAAAAGCCGTTATGTTGGAATATGGTACAAAGTTTCTCCAATAACAGTTGTATGGGTAGCCAACAGAGAAACACCACTCAATGACTACTCAGGAGTTTTGGGATTAGACAGTGATCAAGGAATTCTTAGTATTATGGATGGTACAGGAGCCAAAATCTGGTCCTCAAATGCATCAAAGACAGCAAAGAAACCAATTGTGGTTCAGCTGTTGGAATCAGGAAACTTAGTTGTGAAAAATGGACATAACTTGGAGGGGATTTTATGGCAAAGTTTTGATTATCCTAGTGACACTCTTCTCCCAGGAATGAAAATTGGAAGCAACTTAAAAACAGGTCAGTATTGGGCTCTGAAATCTTGGAAATCTCTGGAAGATCCTACTCCAGGTGATTATTCATTTCATATTGACACTCATGGGCTTCCTCAAATAGTTATAACAAAGGAGGGTACAGTAGTTTATAGATCAGGGTCATGGAATGGTCTTAGTATTACAGGAACCCCAGATCTAATAACTGACAAAAATTTTAAATATCTTTTTGTGACAAATAGAGAGGAAGTCTTTTATGAGATTGAACTCCTAAATAGTTCAGTTATCATGAGAAGCAGATTGACTCCATTTGGCTATCAAATACGTTTCACTTGGTCATATCAGAAACAAAGTTGGGACCAACAACAACCTGGCCCGTTTGATCAGTGTACAAATTATGCCTTGTGTGGTACAAATACTAATTGCAACGCCAGCAACACTCAACCCTGTGAATGCTTGACAGGATTCAAAGCCAAATCTACAGATTCAGCAGGTAAGTTTGGTGGTTGTGTTAGAACTACCCCACTGGACTGTAATAAAGGAGATAGTTTTTATACGTACGAGGGAATGAAATTGCCAGACACATCTTCATCGTGGTATGATAAGACCATTACTTTAAAGGAATGTGAGAGATTATGTTTGAGCAACTGCTCTTGCACTGGATATGCTAAATTGAATGTTAGTGGCATGGTAAGTGGCTGTTTGCATTGGTTTTCTGATGTTGTTGACATGAGGAAACTCCCTCTGGGAGGACAAGATTTTTACTTACGAGTGACTGCACCTTCACAGATAGATCACCGCGTCAACAAGAAGAAACTAGTAGGAATAGTGGTTGGCTGTACTGTGTTCATCATTGGCATTACAGTATTTGGAGTGATATTATGCATTAGGAAGAAGAAACTCACGCAGCAAGAGACAATTAACAGGATGGACAAGAGTCAGAAGGGTGACATTGATTTACCAATGTTCGATTTTTTAACCATTTCTAATGCCACAAATCAATTTTCACATATTAACAAATTGGGACAAGGTGGCTTTGGACCAGTGTACAAGGGTATATTATCAGATGGGCAAGAGATTGCAGTTAAGAGGCTTTCCAAAAGTTCAGGACAAGGTTTGGAGGAGTTCAAAAATGAAGTCATGTTGATTGCAAAACTTCAACACCGCAATCTTGTTAAGCTTCTTGGTTGTTCTATTCAGCAAGAAGAGAAGTTGTTGATTTATGAATTCATGCCCAATAGAAGCTTGGACTACTTTATTTTTGATTCAACAAGACGTAAAGTATTAGGCTGGGCTAAGCGATTAGAAATTGTTGGTGGAATTGCTAGAGGACTTCTTTATCTTCATGAAGACTCTAGACTAAAGATCATTCACAGAGATCTAAAAACCAGCAACGTTCTTCTTGATAGTAATATGAATCCAAAAATATCAGATTTTGGTATGGCTAGGACATTTGAACTAGACCAAGATGAAGCAAATACAAATAGAGTGATGGGAACATATGGTTATATGCCTCCAGAATATGCTGTGCATGGATCTTTTTCAGTCAAATCTGATGTCTTCAGCTTTGGTGTGATTGTGTTGGAGATAATTAGTGGGAGGAAGAACAGGGGATTTTCTGATCCACATCGTCACCTTAATCTTCTTGGACATGCATGGAGACTATGGATTGAAGAAAGGCCAATTGAACTTATGGATGAGTTAGTGGAAGATTCAACCGGTTCATCTGATATATTAAGATATATTCATATTGGTTTGTTATGTGTACAACAAATACCAGAGGATAGGCCAAACATGTCATCTGTGGTTTTAATGTTGAATGGTGAGAAGTTATTGCCAGAGCCAAGTCAACCTGGGTTCTACACAGGAAGAGATCATCCAACCCAAACAGATTCTTCTTCAAGAAATTGTGAAGAGTATTCGCGCAATGAAATTTCTGACTCATTATTGGAGGCAAGATAA 2436 0.3855 MESFKSSVMYSLFLSFVSMSSAVDMITPSQHIQDGKNETLVSTNGTFEAGFFSPENSKSRYVGIWYKVSPITVVWVANRETPLNDYSGVLGLDSDQGILSIMDGTGAKIWSSNASKTAKKPIVVQLLESGNLVVKNGHNLEGILWQSFDYPSDTLLPGMKIGSNLKTGQYWALKSWKSLEDPTPGDYSFHIDTHGLPQIVITKEGTVVYRSGSWNGLSITGTPDLITDKNFKYLFVTNREEVFYEIELLNSSVIMRSRLTPFGYQIRFTWSYQKQSWDQQQPGPFDQCTNYALCGTNTNCNASNTQPCECLTGFKAKSTDSAGKFGGCVRTTPLDCNKGDSFYTYEGMKLPDTSSSWYDKTITLKECERLCLSNCSCTGYAKLNVSGMVSGCLHWFSDVVDMRKLPLGGQDFYLRVTAPSQIDHRVNKKKLVGIVVGCTVFIIGITVFGVILCIRKKKLTQQETINRMDKSQKGDIDLPMFDFLTISNATNQFSHINKLGQGGFGPVYKGILSDGQEIAVKRLSKSSGQGLEEFKNEVMLIAKLQHRNLVKLLGCSIQQEEKLLIYEFMPNRSLDYFIFDSTRRKVLGWAKRLEIVGGIARGLLYLHEDSRLKIIHRDLKTSNVLLDSNMNPKISDFGMARTFELDQDEANTNRVMGTYGYMPPEYAVHGSFSVKSDVFSFGVIVLEIISGRKNRGFSDPHRHLNLLGHAWRLWIEERPIELMDELVEDSTGSSDILRYIHIGLLCVQQIPEDRPNMSSVVLMLNGEKLLPEPSQPGFYTGRDHPTQTDSSSRNCEEYSRNEISDSLLEAR 811
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3668g00015 811 Pfam Protein tyrosine and serine/threonine kinase 496 760 IPR001245 GO:0004672|GO:0006468
Gabi3668g00015 811 Pfam PAN-like domain 336 402 IPR003609 -
Gabi3668g00015 811 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 458 568 - -
Gabi3668g00015 811 Gene3D Transferase(Phosphotransferase) domain 1 569 770 - -
Gabi3668g00015 811 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 12 755 - -
Gabi3668g00015 811 SMART ntp_6 337 416 IPR003609 -
Gabi3668g00015 811 ProSiteProfiles PAN/Apple domain profile. 336 417 IPR003609 -
Gabi3668g00015 811 SUPERFAMILY alpha-D-mannose-specific plant lectins 73 181 IPR036426 -
Gabi3668g00015 811 MobiDBLite consensus disorder prediction 773 811 - -
Gabi3668g00015 811 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 18 148 - -
Gabi3668g00015 811 MobiDBLite consensus disorder prediction 795 811 - -
Gabi3668g00015 811 CDD B_lectin 35 151 IPR001480 -
Gabi3668g00015 811 Gene3D Phosphorylase Kinase; domain 1 453 568 - -
Gabi3668g00015 811 Pfam D-mannose binding lectin 72 177 IPR001480 -
Gabi3668g00015 811 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 569 772 - -
Gabi3668g00015 811 CDD PAN_AP_plant 332 416 - -
Gabi3668g00015 811 ProSiteProfiles Bulb-type lectin domain profile. 23 147 IPR001480 -
Gabi3668g00015 811 ProSitePatterns Serine/Threonine protein kinases active-site signature. 614 626 IPR008271 GO:0004672|GO:0006468
Gabi3668g00015 811 Gene3D Hepatocyte Growth Factor 333 413 - -
Gabi3668g00015 811 MobiDBLite consensus disorder prediction 780 794 - -
Gabi3668g00015 811 CDD STKc_IRAK 499 766 - -
Gabi3668g00015 811 SMART serkin_6 493 740 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3668g00015 811 ProSiteProfiles Protein kinase domain profile. 493 770 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3668g00015 811 SUPERFAMILY Protein kinase-like (PK-like) 478 781 IPR011009 -
Gabi3668g00015 811 PIRSF SRK 2 811 IPR024171 GO:0004674
Gabi3668g00015 811 SMART blect_4 29 151 IPR001480 -
Gabi3668g00015 811 Gene3D - 17 148 IPR036426 -
Gabi3668g00015 811 Pfam S-locus glycoprotein domain 209 317 IPR000858 GO:0048544
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3668g00015 Gabi-Chr3668 287071 291114 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3668g00015 445 779 Receptor kinase-like Gene Family AT4G23140 54.913 2.03e-127 395
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gabi3668g00015 PK_Tyr_Ser-Thr 2.6e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3668g00015 - - gmx:100802416 1191.02