Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3668g00011 ATGGGCATTCTTCCTGTTATGCTTGTTATTACCATAGTAATACTCTTATTCTCCTCTCAAATCTCCTCTGCAATTGATACCATTACCCTTTTTCAATCACTTCCTGATGGCAGAACCTTGGTGTCAAAAGATGGAATCTTTGAGTTGGGTTTCTTCAGTCCAAGTAGTTCAACAAACCGCTACGTTGGAATATGGTACAAAAATATCCCAGTTAGATCTGTTGTTTGGGTTGCAAACCGTGACACTCCAATCAAAGACAACTCCAGCATGTTAAACATAAGTAAAGAGGGAAACCTTGTCCTTCTCAGCCAGAACGGCACAGTTCATTGGTCAACAAACGCAACAAAAAAGGCCTTCAATGCCACAGCTCAGCTTTTAGATTCTGGCAACTTGGTTTTAAGAGATGAACATGACAACAATCCTGAAAGCTTCTTGTGGCAAAGCTTTGATTATCCGTCTGATACCTTGTTACCAGGAATGAAGCTTGGATGGAACCTAAAGACCAACCTTAATCGTCATCTAACAGCTTGGAAGAACAAGGAGGACCCTTCTATGGGAGATTTTACTTGGGGTTTCGTACGTAGCAGCAATCCTGAAATGGTGATGTGGAAGGGCTTAACTAAGTACTACAGAGGTGGCCCTTGGAATGGGATTCAATTCAGCGCTGCACCATCTTTGAAATATGACCCAATGTTCGATTTCAAGTTTGTGTACAATGAGGATGAGTTGTATTACACATTCAGCCTCAAGAATAAGTCTGTGGTTTCAATACTTGTCATGAACCAAACGACTTATGCTCGTGAGCGCTACACATGGATTGAAGAAGCTAAAACTTGGAGGATGTATTCATCTACGCCAAGAGACTATTGTGATAACTATAATCTTTGTGGCCCATTTGGAAATTGTGCCATGGGTGAGTCCCCTGTTTGCCAGTGTTTACGTGGATTCAATCCAAAATCACCTCAGGACTGGATCACAATGGACTGGACTCAAGGATGCGTGATAAGTGAAACTTGGAAGTGCAAGGAGAAAGATAAAGATGGTTTCCTCAAATTCATTAACATGAAGGTGCCAGACACTGACAAATCTTGGGTTAATGGAAGTATGACACTTGAGGAATGTAAAGCCAAATGCTGGGAAAACTGTTCTTGTACAGCCTTTGCAAACTCAGATATAAGAGGAGAAGGTATTGGGTGTGTCCTTTGGTTTGATGATCTATTAGATTTGAGAAGGCTTCCAGATGCTGGGCAAGACCTGTATGTTAGAGTGGCTACCTCTGAAATAGAAAATCAAGATGCGAAAGATGATTTAAAGAAAAAGGTGGTTGTGATCACAAGCACTGTTTCGTCTATTATTGTGATGCTTTTAATATTGACTTTCATTTACCGGAGGAGGAAAACAATTAAAGAAAAACCCTGGGCAAGACAAAAGAATGATGAAAGCAAAGAAGAAGATTTTGACCTACCTCTATTCGACCTTGCTTCAATAGCACATACCACTGATGACTTCTCAAGTGACAAGAAGCTTGGCGAGGGGGGTTTTGGGCCTGTATATAGGGGAACACTGCCAGATGGACAAGAGATTGCTGTCAAGAGACTTTCACGAACATCAGGACAAGGATTGAAAGAATTTAAGAATGAGGTTATATTCTGTGCCAAGCTTCAACACCGGAATCTTGTTAAGGTCCTTGGTTGTTGCATTCAAGAAGATGAGAAATTACTCATATATGAATACATGTCCAACAAAAGCCTCGATTACTTCCTTTTTGATTCTACTCGAAGTAATCTTCTCGACTGGTCCAAACGTTTGTACATTATAACTGGCATTGCTCGAGGGCTTCTTTATCTTCATCAAGACTCAAGATTAAGGATCATACATAGAGATCTTAAAGCCAGTAATGTTTTATTAGACAATGACATGAACCCGAAAATTTCTGATTTTGGCTTAGCTCGAATGTGTGGTGGTGATCAAATTGAAGGAAACACAAGCAGAGTTGTTGGTACATACGGTTATATGGCACCTGAATATGCCTTTGATGGGTTATTCTCCATCAAATCTGATGTATTTAGCTTCGGCATATTATTGCTAGAGATAATAAGCGGCAAGAAAAACAAAGGGCTTTCCTATCCAAACTATAATTGCAATCTTATTGGACATGCATGGAAGTTGTGGAAAGAGGGCATCCCAATGAAATTGATTGATTCTTGTATGGTGGAGTCATGCATTCTATCTGAAGTCTTACGTTGCATTCATATTGGACTTTTGTGCGTGCAACATCGTCCAGACGATAGGCCAAACATGGCAAATGTGGTTGTGATGTTAAGCAGTGAGAGTACTTTGCCTCTACCAAAGGAGCCTGGTTTCTTAATGGAAAAGGGGCCAATTGATGGAGAATCGTCTTCTGAGAAGCATATATTTTCTTCTTCTAATGAGCTAACTATCTCAGTGTTGGACGCCAGATAG 2463 0.4044 MGILPVMLVITIVILLFSSQISSAIDTITLFQSLPDGRTLVSKDGIFELGFFSPSSSTNRYVGIWYKNIPVRSVVWVANRDTPIKDNSSMLNISKEGNLVLLSQNGTVHWSTNATKKAFNATAQLLDSGNLVLRDEHDNNPESFLWQSFDYPSDTLLPGMKLGWNLKTNLNRHLTAWKNKEDPSMGDFTWGFVRSSNPEMVMWKGLTKYYRGGPWNGIQFSAAPSLKYDPMFDFKFVYNEDELYYTFSLKNKSVVSILVMNQTTYARERYTWIEEAKTWRMYSSTPRDYCDNYNLCGPFGNCAMGESPVCQCLRGFNPKSPQDWITMDWTQGCVISETWKCKEKDKDGFLKFINMKVPDTDKSWVNGSMTLEECKAKCWENCSCTAFANSDIRGEGIGCVLWFDDLLDLRRLPDAGQDLYVRVATSEIENQDAKDDLKKKVVVITSTVSSIIVMLLILTFIYRRRKTIKEKPWARQKNDESKEEDFDLPLFDLASIAHTTDDFSSDKKLGEGGFGPVYRGTLPDGQEIAVKRLSRTSGQGLKEFKNEVIFCAKLQHRNLVKVLGCCIQEDEKLLIYEYMSNKSLDYFLFDSTRSNLLDWSKRLYIITGIARGLLYLHQDSRLRIIHRDLKASNVLLDNDMNPKISDFGLARMCGGDQIEGNTSRVVGTYGYMAPEYAFDGLFSIKSDVFSFGILLLEIISGKKNKGLSYPNYNCNLIGHAWKLWKEGIPMKLIDSCMVESCILSEVLRCIHIGLLCVQHRPDDRPNMANVVVMLSSESTLPLPKEPGFLMEKGPIDGESSSEKHIFSSSNELTISVLDAR 820
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3668g00011 820 ProSiteProfiles PAN/Apple domain profile. 341 424 IPR003609 -
Gabi3668g00011 820 PIRSF SRK 1 820 IPR024171 GO:0004674
Gabi3668g00011 820 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 11 761 - -
Gabi3668g00011 820 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 340 423 - -
Gabi3668g00011 820 Pfam PAN-like domain 341 409 IPR003609 -
Gabi3668g00011 820 Pfam Protein tyrosine and serine/threonine kinase 505 773 IPR001245 GO:0004672|GO:0006468
Gabi3668g00011 820 SMART ntp_6 344 423 IPR003609 -
Gabi3668g00011 820 ProSiteProfiles Protein kinase domain profile. 503 780 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3668g00011 820 Pfam D-mannose binding lectin 74 178 IPR001480 -
Gabi3668g00011 820 ProSiteProfiles EGF-like domain profile. 286 322 IPR000742 -
Gabi3668g00011 820 SUPERFAMILY alpha-D-mannose-specific plant lectins 74 183 IPR036426 -
Gabi3668g00011 820 Pfam S-locus glycoprotein domain 210 320 IPR000858 GO:0048544
Gabi3668g00011 820 ProSiteProfiles Bulb-type lectin domain profile. 25 146 IPR001480 -
Gabi3668g00011 820 Gene3D - 19 149 IPR036426 -
Gabi3668g00011 820 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 467 578 - -
Gabi3668g00011 820 ProSitePatterns Serine/Threonine protein kinases active-site signature. 624 636 IPR008271 GO:0004672|GO:0006468
Gabi3668g00011 820 SMART blect_4 31 152 IPR001480 -
Gabi3668g00011 820 CDD STKc_IRAK 509 774 - -
Gabi3668g00011 820 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 579 781 - -
Gabi3668g00011 820 Gene3D Phosphorylase Kinase; domain 1 464 578 - -
Gabi3668g00011 820 CDD PAN_AP_plant 342 424 - -
Gabi3668g00011 820 Gene3D Transferase(Phosphotransferase) domain 1 579 780 - -
Gabi3668g00011 820 SMART serkin_6 503 772 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3668g00011 820 Pfam Domain of unknown function (DUF3403) 775 820 IPR021820 GO:0004674
Gabi3668g00011 820 SUPERFAMILY Protein kinase-like (PK-like) 486 774 IPR011009 -
Gabi3668g00011 820 CDD B_lectin 32 152 IPR001480 -
Gabi3668g00011 820 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 21 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3668g00011 Gabi-Chr3668 195691 199259 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3668g00011 430 789 Receptor kinase-like Gene Family AT4G23190 52.055 3.39e-127 392
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gabi3668g00011 PK_Tyr_Ser-Thr 9.6e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3668g00011 - - gmx:100786696 1107.43