Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3668g00009 ATGGACGTGGACATAGTGAAAACTTCGGCTAGTGACAACAGCAGCATGGACATGATATCAATGATGATGCAAATGGAAAAGTACCCTGAATTTTGTGAACCTTTTTATAACAACAACACTCCCACTTACCAAGAAAACGAGTTCACACTTGGTGGAAACACAACCAGCAATAATATTTCCACAACTACTTCTGTGCCAATATTTAACGTTAACCCAAATGTAACTCCACCGACTTTGATTGATCCACCAGTACCGTCCAATCTCAATTTCAACCCTATCCAACAACAATCTATGACAACAACGTTAACACCAAACCTTCAACAACCCAACGCTTCATTTCCCTACCCATCAGAGAAAAAGAGTTCTATGACCGCCATGAGGGAAATGATTTTCCGAATAGCGGTGATGCAACCGATTCATATAGACCCTGAATCTATAAAGCCACCGAAGCGAAGGAACGTGAAGATTTCAAAGGATCCACAGAGTGTGGCTGCGAGGCACAGAAGGGAAAGGATAAGCGAGAGGATAAGGATCCTTCAGAGATTAGTTCCTGGTGGAACGAAAATGGACACTGCTTCTATGTTGGATGAAGCCATACACTATGTGAAGTTCTTGAAGAAACAAGTGCAGACGCTGGAACAAGCAGGGGCAAGTAGTAGCATTAATGGTGGCGTTGGAATATTCCATGGGATGCAGAACTCCAATGTGAATTATTCTGCTTTGTTGATGAAGGGTTGTCAACCTTGTCAAGTTGTGGGTTCTACTTCTACTTCTAGACAATTGCTTAGCTTAGAGAGAGCCTGA 804 0.4254 MDVDIVKTSASDNSSMDMISMMMQMEKYPEFCEPFYNNNTPTYQENEFTLGGNTTSNNISTTTSVPIFNVNPNVTPPTLIDPPVPSNLNFNPIQQQSMTTTLTPNLQQPNASFPYPSEKKSSMTAMREMIFRIAVMQPIHIDPESIKPPKRRNVKISKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQVQTLEQAGASSSINGGVGIFHGMQNSNVNYSALLMKGCQPCQVVGSTSTSRQLLSLERA 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3668g00009 267 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 160 215 IPR036638 GO:0046983
Gabi3668g00009 267 FunFam BHLH transcription factor 159 222 - -
Gabi3668g00009 267 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 156 205 IPR011598 GO:0046983
Gabi3668g00009 267 SMART finulus 162 211 IPR011598 GO:0046983
Gabi3668g00009 267 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 9 246 IPR045843 GO:0003700|GO:0006355
Gabi3668g00009 267 CDD bHLH_AtIND_like 157 213 - -
Gabi3668g00009 267 Coils Coil 195 215 - -
Gabi3668g00009 267 Pfam Helix-loop-helix DNA-binding domain 166 205 IPR011598 GO:0046983
Gabi3668g00009 267 Gene3D - 155 222 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3668g00009 Gabi-Chr3668 164711 165514 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3668g00009 12 225 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G50330 51.754 1.08e-50 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gabi3668g00009 HLH 1.7e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3668g00009 - - gmx:100796649 279.641