Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3668g00008 ATGGATTGGGTTCGAGGAAACCCTGTTGGTAGAGGGAGCTTTGGCACAGTGAATTTAGCACTACCTGGTAAAAACTCAACTCAATTTCCAGCTGCTACGGTTGTGAAGTCCTCACAGGTTCTTAACTCGTTTTCGATAAGGAACGAGAAACAAGTGCTCGATCGCCTAGGTTCTTGCTCGAGAATCATTCGGTGCTTCGGCGATGACTACACATTCGAAGATGGCGACGAGTACTACAATTTGTTCCTCGAGTACGCCGCCGGCGGCACGCTCGCCGATCAGATCAATTTTCACGGTGGACGGATCCCGGAGCCACTCGTTCGGCGTTACACGAGGTCCATCGTCGAGGGTCTAACGCATATTCACCAAAACGGGTTTGTTCACTGCGACATAAAGCTCCCAAACATCCTCGTATTCGACGATGGAGAAATCAAAATCGCAGACTTCGGTCTTGCGAAGGAGGCAGGGGAGAAACAGAGTGAAGGGTTCGAGTGCAGGGGAACTCCGCTTTTTATGTCGCCGGAATCGGTGAACGACGGCGAGCACGAGTCGCCGGCGGATATATGGGCTCTTGGGTGCGCGATGGTTGAGATGGTGACAGGAAAACCTGCGTGGAATATGCAGAAGGGTTCAAGTATGTGTTCCTTGTTGTTTCGAATTGGGATGGGAGAAGAATTGCCAGAGATACCCGAAGAGTTATCACAAGAGGGTAAGGATTTTCTGGGCAAGTGTTTTGTGAAGGATCCAAGTAAGAGATGGACGGCTGAGATGCTTTTGAAACATCCCTTTGTTGCTGATGATGATGATACTGTTTCATTGAAGCATTTCAATGAGTCACCAAGAACCAATTTTGATTTCCCAGATTGGGTTTCTATTGTGGCGGCTTCAGTTCCAAGTTCACCGGAATCTGAAGAGGCTCCTCAATGGGAATTTGATTCGTCGCGTTTGTCAATTTTTTGTTCGCCTTTGGACCGGATCCGACAGCTCGTGACGGTTCAGGGACCGGAAAATTGGTCGGAAGCAGATAGTTGGATTAGTGTTAGGTGA 1047 0.489 MDWVRGNPVGRGSFGTVNLALPGKNSTQFPAATVVKSSQVLNSFSIRNEKQVLDRLGSCSRIIRCFGDDYTFEDGDEYYNLFLEYAAGGTLADQINFHGGRIPEPLVRRYTRSIVEGLTHIHQNGFVHCDIKLPNILVFDDGEIKIADFGLAKEAGEKQSEGFECRGTPLFMSPESVNDGEHESPADIWALGCAMVEMVTGKPAWNMQKGSSMCSLLFRIGMGEELPEIPEELSQEGKDFLGKCFVKDPSKRWTAEMLLKHPFVADDDDTVSLKHFNESPRTNFDFPDWVSIVAASVPSSPESEEAPQWEFDSSRLSIFCSPLDRIRQLVTVQGPENWSEADSWISVR 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3668g00008 348 ProSiteProfiles Protein kinase domain profile. 3 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3668g00008 348 ProSitePatterns Serine/Threonine protein kinases active-site signature. 126 138 IPR008271 GO:0004672|GO:0006468
Gabi3668g00008 348 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 3 300 - -
Gabi3668g00008 348 SMART serkin_6 3 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3668g00008 348 Pfam Protein kinase domain 6 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3668g00008 348 CDD STKc_MAPKKK 2 264 - -
Gabi3668g00008 348 FunFam Mitogen-activated protein kinase kinase kinase 17 2 293 - -
Gabi3668g00008 348 Gene3D Transferase(Phosphotransferase) domain 1 93 285 - -
Gabi3668g00008 348 Gene3D Phosphorylase Kinase; domain 1 1 92 - -
Gabi3668g00008 348 SUPERFAMILY Protein kinase-like (PK-like) 3 300 IPR011009 -
Gabi3668g00008 348 ProSitePatterns Protein kinases ATP-binding region signature. 9 36 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3668g00008 Gabi-Chr3668 126607 128067 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3668g00008 1 348 MAP Kinase Kinase Kinase AT4G36950 54.237 8.20e-122 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Gabi3668g00008 Pkinase 1.5e-55 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3668g00008 - - gmx:100798607 489.574